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Series GSE32166 Query DataSets for GSE32166
Status Public on Sep 01, 2013
Title tnni2 Binding Genome Seqences
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-Seq analysis of the potential accumulated binding sites on whole genome by wild-type tnni2 and tnni2 del175k mutant
Overall design
The primary osteoblasts from Tnni2del175k/175k mice and wild-type littermates (n=3) were cultured for ChIP-Seq. ChIP and construct libraries were performed using the antibody against tnni2 (Santa Cluz Biotechnology) and conducted as previously described above. Illumina HiSeq 2000 is used for sequencing. Raw reads were aligned with the mouse reference 8 using Bowtie software and viewed with the IGV browser.
Contributor(s) zhu x, gao s, yang Z
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Submission date Sep 15, 2011
Last update date May 15, 2019
Contact name xiaoquan zhu
Organization name beijing hospital
Street address N01 dahua road dongdan beijing
City beijing
ZIP/Postal code 100730
Country China
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (2)
GSM797452 del175k mutant_ChIPSeq
GSM797453 wild-type_ChIPSeq
This SubSeries is part of SuperSeries:
GSE32401 Tnni2del175k mutant mice and their wild-type littermates using mRNA array and ChIP-seq
SRA SRP008507
BioProject PRJNA154869

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE32166_RAW.tar 95.4 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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