|
Status |
Public on Jul 19, 2011 |
Title |
Mammalian X upregulation |
Organisms |
Mus musculus; Mus musculus x Mus spretus |
Experiment type |
Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Expression profiling by array
|
Summary |
This SuperSeries is composed of the SubSeries listed below.
|
|
|
Overall design |
Refer to individual Series
|
|
|
Citation(s) |
22019781, 23523075, 25887447, 26248554 |
|
Submission date |
Jul 18, 2011 |
Last update date |
Oct 09, 2019 |
Contact name |
Xinxian Deng |
E-mail(s) |
dengx2@u.washington.edu
|
Organization name |
University of Washington
|
Department |
Laboratory Medicine and Pathology
|
Lab |
HSB C526
|
Street address |
1959 NE Pacific St.
|
City |
Seattle |
State/province |
WA |
ZIP/Postal code |
98195 |
Country |
USA |
|
|
Platforms (9)
|
GPL1261 |
[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array |
GPL6246 |
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version] |
GPL9185 |
Illumina Genome Analyzer (Mus musculus) |
GPL9833 |
NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design |
GPL10129 |
NimbleGen Mouse 2.1 M array 10 of 10 |
GPL16143 |
NimbleGen Mouse 2.1M deluxe promoter array (ver. 2) |
GPL16616 |
Illumina HiSeq 2000 (Mus musculus x Mus spretus) |
GPL16617 |
Illumina Genome Analyzer IIx (Mus musculus x Mus spretus) |
GPL16733 |
NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design |
|
Samples (60)
|
|
This SuperSeries is composed of the following SubSeries:
|
GSE30689 |
Enrichment profiles of Ser-5 phosphorylated RNA polymerase II (PolII S5p) in mouse female ES cells |
GSE30690 |
Expression analysis in mouse female PGK12.1 ES cells by RNA-seq |
GSE44251 |
Expression data from undifferentiated and differentiated mouse female ES cells PGK12.1 |
GSE44252 |
Expression data from mouse ES cells after control RNAi (scramble siRNAs) or specific RNAi (siRNAs for specific genes) treatment |
GSE44255 |
Allele-specific maps of RNA polymerase II phosphorylated at serine 5 in mouse cultured hybrid cells and mouse hybrid brain |
GSE44835 |
Upregulation of the mammalian X chromosome is associated with enhanced transcription initiation, MOF-mediated H4K16 acetylation, and longer RNA half-life |
|
Relations |
BioProject |
PRJNA144109 |