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Series GSE30601 Query DataSets for GSE30601
Status Public on Oct 24, 2012
Title Epigenetic analysis of gastric cancer
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome-wide DNA methylation profiling of gastric tumors and matched gastric non-malignant samples. The Illumina HumanMethylation27 BeadChip was used to obtain DNA methylation profiles across 27,578 CpGs in 203 gastric tumors and 94 matched non-malignant gastric samples.
 
Overall design Bisulphite-converted DNA from the 203 gastric tumors and 94 matched gastric non-malignant samples was hybridized to the Illumina HumanMethylation27 BeadChip.
 
Contributor(s) Zouridis H, Tan P
Citation(s) 23076357, 23684942, 26934957
Submission date Jul 12, 2011
Last update date May 29, 2020
Contact name Patrick Tan
Organization name Duke-NUS Graduate Medical School
Street address 8 College Rd.
City Singapore
ZIP/Postal code 169857
Country Singapore
 
Platforms (1)
GPL8490 Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2)
Samples (297)
GSM759072 Genomic DNA from 980021
GSM759073 Genomic DNA from 970003
GSM759074 Genomic DNA from 970010
Relations
BioProject PRJNA144547

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30601_RAW.tar 5.8 Mb (http)(custom) TAR
GSE30601_unmethylated_methylated_signal_intensities.txt.gz 44.1 Mb (ftp)(http) TXT
Processed data included within Sample table
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