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Series GSE30558 Query DataSets for GSE30558
Status Public on Jan 18, 2012
Title Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChiP-seq) directly informs methylation status
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary Bisulphite sequencing enables DNA methylation analysis of every cytosine residue. We have optimized conditions for combining chromatin immunoprecipation (ChIP) with high throughput bisulphite sequencing to study the relationship between histone modifications and DNA methylation.
Overall design Paired-end bisulphite sequencing of H3K27me3-ChIP DNA for LNCaP and PrEC cell lines
Contributor(s) Robinson MD
Citation(s) 22466171
Submission date Jul 11, 2011
Last update date May 15, 2019
Contact name Mark Robinson
Organization name University of Zuerich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zuerich
ZIP/Postal code 8057
Country Switzerland
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM758360 LNCaP H3K27me3-ChIP-BS
GSM758361 PrEC H3K27me3-ChIP-BS
This SubSeries is part of SuperSeries:
GSE34403 Bisulphite-sequencing of chromatin immunoprecipitated DNA directly informs methylation status of histone-modified DNA
SRA SRP007491
BioProject PRJNA155495

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30558_GSM758360_LNCaP.minus.bam 2.0 Gb (ftp)(http) BAM 2.0 Gb (ftp)(http) BAM
GSE30558_GSM758361_PrEC.minus.bam 1.1 Gb (ftp)(http) BAM 1.1 Gb (ftp)(http) BAM
GSE30558_RAW.tar 649.1 Mb (http)(custom) TAR (of BED, CSV, WIG)
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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