|
| Status |
Public on Apr 27, 2012 |
| Title |
TMPRSS2-ERG, HDACs and EZH2 are involved in an AR-centric transcriptional circuitry that calibrates androgenic response for prostate cancer progression |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
22531786 |
| Submission date |
Apr 28, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Kern Rei Chng |
| E-mail(s) |
chngkr99@gis.a-star.edu.sg
|
| Organization name |
GIS
|
| Department |
Cancer Biology and Pharmacology 3
|
| Lab |
Cancer Biology and Pharmacology 3
|
| Street address |
60 Biopolis Street #02-01 Genome
|
| City |
Singapore |
| ZIP/Postal code |
138672 |
| Country |
Singapore |
| |
|
| Platforms (3) |
| GPL6883 |
Illumina HumanRef-8 v3.0 expression beadchip |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
| GPL10558 |
Illumina HumanHT-12 V4.0 expression beadchip |
|
| Samples (27)
|
| GSM717370 |
VCAP, 6h 10nM DHT |
| GSM717371 |
VCAP, 12h ETOH |
| GSM717372 |
VCAP, 12h 10nM DHT |
| GSM717373 |
VCAP, 24h ETOH |
| GSM717374 |
VCAP, 24h 10nM DHT |
| GSM717391 |
VCaP Genomic Input sequencing |
| GSM717392 |
AR ChIP sequencing in 0hr treated VCaP cells |
| GSM717393 |
AR ChIP sequencing in 2hr 100nM DHT treated VCaP cells |
| GSM717394 |
AR ChIP sequencing in 18hr 100nM DHT treated VCaP cells |
| GSM717395 |
ERG ChIP sequencing in 0hr treated VCaP cells |
| GSM717396 |
ERG ChIP sequencing in 2hr 100nM DHT treated VCaP cells |
| GSM717397 |
ERG ChIP sequencing in 18hr 100nM DHT treated VCaP cells |
| GSM717398 |
HDAC1 ChIP sequencing in 2hr ETOH treated VCaP cells |
| GSM717399 |
HDAC1 ChIP sequencing in 2hr 100nM DHT treated VCaP cells |
| GSM717400 |
HDAC2 ChIP sequencing in 2hr ETOH treated VCaP cells |
| GSM717401 |
HDAC2 ChIP sequencing in 2hr 100nM DHT treated VCaP cells |
| GSM717402 |
HDAC3 ChIP sequencing in 2hr ETOH treated VCaP cells |
| GSM717403 |
HDAC3 ChIP sequencing in 2hr 100nM DHT treated VCaP cells |
| GSM717404 |
EZH2 ChIP sequencing in 2hr ETOH treated VCaP cells |
| GSM717405 |
EZH2 ChIP sequencing in 2hr 100nM DHT treated VCaP cells |
| GSM870265 |
VCaP, 8hr EtOH, siNC |
| GSM870266 |
VCaP, 8hr 10nM DHT, siNC |
| GSM870267 |
VCaP, 8hr EtOH, siERG |
| GSM870268 |
VCaP, 8hr 10nM DHT, siERG |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE28948 |
TMPRSS2-ERG, HDACs and EZH2 are involved in an AR-centric transcriptional circuitry that calibrates androgenic response for prostate cancer progression (gene expression data) |
| GSE28950 |
TMPRSS2-ERG, HDACs and EZH2 are involved in an AR-centric transcriptional circuitry that calibrates androgenic response for prostate cancer progression (ChIP-Seq data) |
| GSE35540 |
TMPRSS2-ERG, HDACs and EZH2 are involved in an AR centric transcriptional circuitry that calibrates androgenic response for prostate cancer progression (gene expression after ERG KD) |
|
| Relations |
| BioProject |
PRJNA140433 |
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