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GEO help: Mouse over screen elements for information. |
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Status |
Public on Jan 10, 2025 |
Title |
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation missing |
Has this study been published? Please login to update or notify GEO. |
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Submission date |
Jan 09, 2025 |
Last update date |
Jan 10, 2025 |
Contact name |
Ke Zhao |
E-mail(s) |
zk8584918@gmail.com
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Organization name |
Tianjin Medical University
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Street address |
Qixiangtai Road, No.22
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City |
Tianjin |
ZIP/Postal code |
05000 |
Country |
China |
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Platforms (1) |
GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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Samples (59)
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GSM8702781 |
HAP1,wild-type,ATAC |
GSM8702782 |
HAP1-KRAB, non-targeting control (NTC) sgRNA, ATAC-seq |
GSM8702783 |
HAP1-KRAB, sgRNA targeted rs73156934-tagged CRE, ATAC-seq |
GSM8702784 |
HAP1-delta64, ATAC-seq |
GSM8702785 |
HAP1-delta17, ATAC-seq |
GSM8702816 |
CRISPRi, transcriptomes scRNA-seq, rep1 |
GSM8702817 |
CRISPRko, transcriptomes scRNA-seq, rep1 |
GSM8702818 |
CRISPRa, transcriptomes scRNA-seq, rep1 |
GSM8702819 |
CRISPRi, transcriptomes scRNA-seq, rep2 |
GSM8702820 |
CRISPRko, transcriptomes scRNA-seq, rep2 |
GSM8702821 |
CRISPRa, transcriptomes scRNA-seq, rep2 |
GSM8702822 |
CRISPRi, transcriptomes scRNA-seq,rep3 |
GSM8702823 |
CRISPRko, transcriptomes scRNA-seq, rep3 |
GSM8702824 |
CRISPRa, transcriptomes scRNA-seq, rep3 |
GSM8702825 |
CRISPRi, sgRNA enrichment scRNA-seq, rep1 |
GSM8702826 |
CRISPRa, sgRNA enrichment scRNA-seq, rep1 |
GSM8702827 |
CRISPRko, sgRNA enrichment scRNA-seq, rep1 |
GSM8702828 |
CRISPRi, sgRNA enrichment scRNA-seq, rep2 |
GSM8702829 |
CRISPRa, sgRNA enrichment scRNA-seq, rep2 |
GSM8702830 |
CRISPRko, sgRNA enrichment scRNA-seq, rep2 |
GSM8702831 |
CRISPRi, sgRNA enrichment scRNA-seq, rep3 |
GSM8702832 |
CRISPRa, sgRNA enrichment scRNA-seq, rep3 |
GSM8702833 |
CRISPRko, sgRNA enrichment scRNA-seq, rep3 |
GSM8707255 |
HAP1,wild-type, H3K27ac |
GSM8707256 |
HAP1,wild-type, H3K27me3 |
GSM8707257 |
HAP1,wild-type, H3K4me1 |
GSM8707258 |
HAP1,wild-type, H3K4me3 |
GSM8707259 |
HAP1,wild-type, H3K9me3 |
GSM8707260 |
HAP1,wild-type, H2AK119ub |
GSM8707261 |
HAP1-KRAB, sgRNA targeted rs73156934-tagged CRE, H3K27ac |
GSM8707262 |
HAP1-KRAB, sgRNA targeted rs73156934-tagged CRE, H3K27me3 |
GSM8707263 |
HAP1-KRAB, sgRNA targeted rs73156934-tagged CRE, H3K4me1 |
GSM8707264 |
HAP1-KRAB, sgRNA targeted rs73156934-tagged CRE, H3K4me3 |
GSM8707265 |
HAP1-KRAB, sgRNA targeted rs73156934-tagged CRE, H3K9me3 |
GSM8707266 |
HAP1-KRAB, sgRNA targeted rs73156934-tagged CRE, H2AK119ub |
GSM8707267 |
HAP1-KRAB, non-targeting control (NTC) sgRNA, H3K27ac |
GSM8707268 |
HAP1-KRAB, non-targeting control (NTC) sgRNA, H3K27me3 |
GSM8707269 |
HAP1-KRAB, non-targeting control (NTC) sgRNA, H3K4me1 |
GSM8707270 |
HAP1-KRAB, non-targeting control (NTC) sgRNA, H3K4me3 |
GSM8707271 |
HAP1-KRAB, non-targeting control (NTC) sgRNA, H3K9me3 |
GSM8707272 |
HAP1-KRAB, non-targeting control (NTC) sgRNA, H2AK119ub |
GSM8708342 |
4C-seq, rs79423520 located CRE |
GSM8708343 |
4C-seq, rs143558304 located CRE |
GSM8708344 |
4C-seq, rs73156934 located CRE |
GSM8720909 |
single-cell multiome datasets (ATAC + Gene Expression), Gene Expression, CRISPRi |
GSM8720910 |
single-cell multiome datasets (ATAC + Gene Expression), ATAC-seq, CRISPRi |
GSM8720911 |
single-cell multiome datasets (ATAC + Gene Expression), sgRNA enrichment, CRISPRi |
GSM8720912 |
single-cell multiome datasets (ATAC + Gene Expression), Gene Expression, CRISPRa |
GSM8720913 |
single-cell multiome datasets (ATAC + Gene Expression), ATAC-seq, CRISPRa |
GSM8720914 |
single-cell multiome datasets (ATAC + Gene Expression), sgRNA enrichment, CRISPRa |
GSM8720915 |
single-cell multiome datasets (ATAC + Gene Expression), Gene Expression, CRISPRko |
GSM8720916 |
single-cell multiome datasets (ATAC + Gene Expression), ATAC-seq, CRISPRko |
GSM8720917 |
single-cell multiome datasets (ATAC + Gene Expression), sgRNA enrichment, CRISPRko |
GSM8721340 |
HAP1,Micro-C rep1 |
GSM8721341 |
HAP1,Micro-C rep2 |
GSM8721342 |
HAP1,Micro-C rep3 |
GSM8721343 |
HAP1,Micro-C rep4 |
GSM8721344 |
HAP1,Micro-C rep5 |
GSM8721345 |
HAP1,Micro-C rep6 |
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This SuperSeries is composed of the following SubSeries:
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GSE285458 |
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [ATAC-seq] |
GSE285461 |
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [scRNA-seq] |
GSE285718 |
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [CUT&Tag] |
GSE285760 |
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [4C] |
GSE286205 |
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [scMulti] |
GSE286224 |
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [microC] |
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Relations |
BioProject |
PRJNA1208702 |
Supplementary file |
Size |
Download |
File type/resource |
GSE286226_RAW.tar |
11.9 Gb |
(http)(custom) |
TAR (of BIGWIG, BW, H5, MTX, TSV, TXT, WIG) |
SRA Run Selector |
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