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| Status |
Public on Mar 31, 2013 |
| Title |
Analysis of the Aedes aegypti transcriptome during flavivirus infection |
| Organism |
Aedes aegypti |
| Experiment type |
Expression profiling by array
|
| Summary |
Microarray analysis on days 1, 2 and 7 post-infection with dengue, yellow fever and West Nile virus in Aedes aegypti Rockefeller strain mosquitoes
RNA was purified and hybridized with Nimblegen X4 microarray chips using 81-mer probes designed from 18,000 open reading frames (ORF) found in the Ae. aegypti genome, with 2 different probes per ORF
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| |
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| Overall design |
Nimblegen X4 array format, 81mer probes, RNA samples taken mostly in triplicate, microarray analysis done in triplicate. Thirty seven samples in total. Fold change data with infection/mock on the Series record.
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| |
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| Contributor(s) |
Colpitts TM, Fikrig E |
| Citation(s) |
21909258 |
| |
| Submission date |
Mar 28, 2011 |
| Last update date |
Jul 01, 2013 |
| Contact name |
Tonya M Colpitts |
| E-mail(s) |
tonya.colpitts@yale.edu
|
| Phone |
203-737-5635
|
| Fax |
203-785-6815
|
| Organization name |
Yale University School of Medicine
|
| Department |
Internal Medicine, Section of Infectious Diseases
|
| Lab |
Erol Fikrig
|
| Street address |
300 Cedar St, TAC S410
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06520 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL13335 |
Aedes aegypti whole genome array |
|
| Samples (37)
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| Relations |
| BioProject |
PRJNA139651 |
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