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Series GSE280529 Query DataSets for GSE280529
Status Public on Nov 30, 2024
Title Developmental dynamics of sea urchin and sea star cis-regulation and the evolution of echinoderm genome organization - ATAC-seq
Organisms Strongylocentrotus purpuratus; Patiria miniata
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We identified conserved cis-regultaory elements based on their dynamic chromatin accessibility over the gastrula-larva stages
 
Overall design ATAC-seq assays in wild-type sea urchin whole embryos
 
Contributor(s) Magri M, Voronov D, Ranđelović J, Arnone M, Maeso I, Gómez-Skarmeta JL
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Submission date Oct 29, 2024
Last update date Nov 30, 2024
Contact name Marta Silvia Magri
E-mail(s) marta.s.magri@gmail.com
Organization name Centro Andaluz de Biología del Desarrollo
Street address Carretera de Utrera km1
City Seville
ZIP/Postal code 41013
Country Spain
 
Platforms (2)
GPL28450 Illumina HiSeq 4000 (Strongylocentrotus purpuratus)
GPL33874 Illumina HiSeq 4000 (Patiria miniata)
Samples (14)
GSM8599819 ATAC-seq in sea urchin whole embryos at 11 hpf, replicate 1
GSM8599820 ATAC-seq in sea urchin whole embryos at 11 hpf, replicate 2
GSM8599821 ATAC-seq in sea urchin whole embryos at 24 hpf, replicate 1
This SubSeries is part of SuperSeries:
GSE281904 Deep conservation of cis-regulatory elements and chromatin organization in echinoderms uncover ancestral regulatory features of animal genomes
Relations
BioProject PRJNA1179351

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE280529_RAW.tar 895.4 Mb (http)(custom) TAR (of BW, NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA

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