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Status |
Public on Nov 30, 2024 |
Title |
Developmental dynamics of sea urchin and sea star cis-regulation and the evolution of echinoderm genome organization - ATAC-seq |
Organisms |
Strongylocentrotus purpuratus; Patiria miniata |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
We identified conserved cis-regultaory elements based on their dynamic chromatin accessibility over the gastrula-larva stages
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Overall design |
ATAC-seq assays in wild-type sea urchin whole embryos
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Contributor(s) |
Magri M, Voronov D, Ranđelović J, Arnone M, Maeso I, Gómez-Skarmeta JL |
Citation missing |
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Submission date |
Oct 29, 2024 |
Last update date |
Nov 30, 2024 |
Contact name |
Marta Silvia Magri |
E-mail(s) |
marta.s.magri@gmail.com
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Organization name |
Centro Andaluz de Biología del Desarrollo
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Street address |
Carretera de Utrera km1
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City |
Seville |
ZIP/Postal code |
41013 |
Country |
Spain |
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Platforms (2) |
GPL28450 |
Illumina HiSeq 4000 (Strongylocentrotus purpuratus) |
GPL33874 |
Illumina HiSeq 4000 (Patiria miniata) |
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Samples (14)
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GSM8599819 |
ATAC-seq in sea urchin whole embryos at 11 hpf, replicate 1 |
GSM8599820 |
ATAC-seq in sea urchin whole embryos at 11 hpf, replicate 2 |
GSM8599821 |
ATAC-seq in sea urchin whole embryos at 24 hpf, replicate 1 |
GSM8599822 |
ATAC-seq in sea urchin whole embryos at 24 hpf, replicate 2 |
GSM8599823 |
ATAC-seq in sea urchin whole embryos at 66 hpf, replicate 1 |
GSM8599824 |
ATAC-seq in sea urchin whole embryos at 66 hpf, replicate 2 |
GSM8599825 |
ATAC-seq in sea urchin whole embryos at 72 hpf, replicate 1 |
GSM8599826 |
ATAC-seq in sea urchin whole embryos at 72 hpf, replicate 2 |
GSM8604235 |
ATAC-seq in sea star whole embryos at 24 hpf, replicate 1 |
GSM8604236 |
ATAC-seq in sea star whole embryos at 24 hpf, replicate 2 |
GSM8604237 |
ATAC-seq in sea star whole embryos at 66 hpf, replicate 1 |
GSM8604238 |
ATAC-seq in sea star whole embryos at 66 hpf, replicate 2 |
GSM8604239 |
ATAC-seq in sea star whole embryos at 90 hpf, replicate 1 |
GSM8604240 |
ATAC-seq in sea star whole embryos at 90 hpf, replicate 2 |
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This SubSeries is part of SuperSeries: |
GSE281904 |
Deep conservation of cis-regulatory elements and chromatin organization in echinoderms uncover ancestral regulatory features of animal genomes |
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Relations |
BioProject |
PRJNA1179351 |