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Series GSE274341 Query DataSets for GSE274341
Status Public on Aug 09, 2024
Title B cells targeting parasites capture spatially linked antigens to secure T cell help
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary Our understanding of T-cell-dependent humoral responses has been largely shaped by studies involving model antigens such as recombinant proteins and viruses. In these contexts, B cells internalize the entire antigen or pathogen, and present a range of antigens to helper CD4+ T cells to initiate the humoral response. However, this model does not account for large pathogens (such as parasites) that are too large to be taken up by individual B cells, and the mechanisms by which B cells acquire and present antigens from large complex pathogens to T cells remain poorly understood. Here we used Plasmodium, the causative parasite of malaria, as a model to investigate the requirements for T cell help for B cells targeting the Plasmodium surface circumsporozoite protein (CSP). Upon Plasmodium sporozoite (SPZ) immunization, CSP-specific B cells can form a synapse-like structure with SPZs and take up CSP and non-CSP surface antigens. As a result, CSP-specific B cells can receive help from CD4+ T cells specific to antigens that are located on the surface but not cytosol of the Plasmodium SPZ. Therefore, B cells can obtain help, not only from T cells with the same protein specificity, but also from T cells specific for spatially linked antigens. This flexibility in T cell help may enhance the initiation and maintenance of humoral immune responses to complex pathogens.
 
Overall design MD4 mice were transferred with/without Ighg2A10 B cells, followed by rPfCSP-alum, PfCSP-SPZ immunization or left untreated, and spleens were collected 10 days post immunization. Tfh cells (CD4+CD44+PD-1+CXCR5+) were FACS-purified, hashtaged, counted and pooled (around 2000 cells per mice) for 10X scRNA-seq. Each sample has cells from 5 individual mice that are Hashtagged as 1-5. For sample 1, Hashtag1,2,3 : CSP1,2,3; Hashtag4,5: NoB1, NoB2. For sample2, Hashtag1,2,3: SPZ1,2,3; Hashtag4,5: UT1,2. More detailed information can be found at the R Markdown file associated with the paper at https://doi.org/10.6084/m9.figshare.26526313
 
Contributor(s) Gao X, Cockburn IA
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Aug 08, 2024
Last update date Aug 09, 2024
Contact name Xin Gao
E-mail(s) xin.gao@anu.edu.au
Phone 0450031169
Organization name The Australian National University
Department Immunology
Street address 131 Garran Rd
City Canberra
State/province ACT
ZIP/Postal code 2601
Country Australia
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM8447654 Sample1_Transcriptomes
GSM8447655 Sample1_Antibody_Capture
GSM8447656 Sample1_VDJ
Relations
BioProject PRJNA1145999

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE274341_Sample1_Tfh_Processed_Resubmit.tar.gz 127.8 Mb (ftp)(http) TAR
GSE274341_Sample2_Tfh_Processed_Resubmit.tar.gz 265.5 Mb (ftp)(http) TAR
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Raw data are available in SRA

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