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GEO accession:
Series GSE271566
Query DataSets for GSE271566
Status
Public on Jul 17, 2024
Title
Sequencing experiments on poly(U) polymerase mutants in C. elegans [mrna]
Organism
Caenorhabditis elegans
Experiment type
Expression profiling by high throughput sequencing
Summary
To investigate sRNAs and mRNAs that are targeted by poly(U) polymerases in C. elegans.
Overall design
We performed Illumina-based sRNA-seq and Oxford Nanopore Technologies-based mRNA-seq on various poly(U) polymerase deletion mutants.
Contributor(s)
Leanne K
,
Eleanor M
Citation(s)
39067069
BioProject
PRJNA1066861
Submission date
Jul 05, 2024
Last update date
Oct 16, 2024
Contact name
Eleanor Maine
E-mail(s)
emmaine@syr.edu
Organization name
Syracuse University
Department
Biology
Street address
107 College Place
City
Syracuse
State/province
New York
ZIP/Postal code
13210
Country
USA
Platforms (1)
GPL26522
MinION (Caenorhabditis elegans)
Samples (26)
Less...
More...
GSM8379813
pup-1(tm1021)_mRNA-seq_rep1
GSM8379814
pup-1(tm1021)_mRNA-seq_rep2
GSM8379815
pup-1(tm1021)_mRNA-seq_rep3
GSM8379816
pup-1(tm1021)_mRNA-seq_rep4
GSM8379817
pup-2(tm4344)_mRNA-seq_rep1
GSM8379818
pup-2(tm4344)_mRNA-seq_rep2
GSM8379819
pup-2(tm4344)_mRNA-seq_rep3
GSM8379820
pup-2(tm4344)_mRNA-seq_rep4
GSM8379821
pup-3(tm5089)_mRNA-seq_rep1
GSM8379822
pup-3(tm5089)_mRNA-seq_rep2
GSM8379823
pup-3(tm5089)_mRNA-seq_rep3
GSM8379824
pup-4(om141)_mRNA-seq_rep1
GSM8379825
pup-4(om141)_mRNA-seq_rep2
GSM8379826
pup-4(om141)_mRNA-seq_rep3
GSM8379827
pup-1/-2(om129)_mRNA-seq_rep1
GSM8379828
pup-1/-2(om129)_mRNA-seq_rep2
GSM8379829
pup-1/-2(om129)_mRNA-seq_rep3
GSM8379830
pup-1/-2(om129)_mRNA-seq_rep4
GSM8379831
pup-3(tm5089);pup-4(om141);pup-1/-2(om129)_mRNA-seq_rep1
GSM8379832
pup-3(tm5089);pup-4(om141);pup-1/-2(om129)_mRNA-seq_rep2
GSM8379833
pup-3(tm5089);pup-4(om141);pup-1/-2(om129)_mRNA-seq_rep3
GSM8379834
N2_mRNA-seq_rep1
GSM8379835
N2_mRNA-seq_rep2
GSM8379836
N2_mRNA-seq_rep3
GSM8379837
N2_mRNA-seq_rep4
GSM8379838
N2_mRNA-seq_rep5
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