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Series GSE270810 Query DataSets for GSE270810
Status Public on Jul 01, 2024
Title Activated SKN-1 alters the longevity trajectory of long-lived C. elegans mutants
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Summary In the presence of stressful environments, the SKN-1 cytoprotective transcription factor is activated to induce the expression of gene targets that can restore homeostasis. However, constitutive activation of SKN-1 results in diminished health and a reduction of lifespan. Here we demonstrate the necessity to regulate the activity of SKN-1 for maintaining the longevity promoting responses associated with impaired daf-2/insulin receptor signaling, the eat-2 model of caloric restriction, and glp-1-dependent loss of germ cell proliferation. A hallmark of animals with constitutive SKN-1 activation is the age-dependent loss of somatic lipids and this phenotype is linked to the general reduction in survival in animals harboring the skn-1gf allele, but surprisingly, daf-2lf; skn-1gf double mutant animals do not redistribute somatic lipids which suggests the insulin signaling pathway functions downstream of SKN-1 in the maintenance of lipid distribution. As expected, eat-2lf; skn-1gf double mutant animals, which independently activate SKN-1, continue to display somatic lipid depletion in older ages with and without the skn-1gf activating mutation but animals lacking a proliferating germline do not redistribute somatic lipids, which supports a genetic model where SKN-1 activity is an important regulator of lipid mobilization in response to food availability to fuel the developing germline by engaging the daf-2/insulin receptor pathway.
 
Overall design Differential expression analysis to undestand the transcriptome differences between daf-2lf mutnats and daf-2lf;skn-1gf double mutants
 
Contributor(s) Turner CD, Curran SP
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Submission date Jun 26, 2024
Last update date Jul 01, 2024
Contact name Chris Turner
E-mail(s) cdturner@usc.edu
Organization name University of Southern California
Street address 3715 McClintock Ave
City Los Angeles
State/province CA
ZIP/Postal code 90089
Country USA
 
Platforms (1)
GPL34645 Illumina NovaSeq X (Caenorhabditis elegans)
Samples (12)
GSM8352410 Wildtype control rep 1
GSM8352411 Wildtype control rep 2
GSM8352412 Wildtype control rep 3
Relations
BioProject PRJNA1128548

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE270810_gene_count.txt.gz 2.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

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