NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE269183 Query DataSets for GSE269183
Status Public on Jul 04, 2024
Title Microglia contribute to polyG-dependent neurodegeneration in neuronal intranuclear inclusion disease II
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Neuronal intranuclear inclusion disease (NIID) is a neurodegenerative disease caused by GGC repeat expansion of NOTCH2NLC. Despite the identification of uN2CpolyG, a toxic polyglycine (polyG) protein, the pathogenic mechanisms of NIID remain unclear. Herein, we investigated the role of polyG by expressing wild-type NOTCH2NLC, expanded NOTCH2NLC with 100 GGC repeats (translating or not translating into uN2CpolyG), or mutated NOTCH2NLC that encodes a pure polyG without GGC-repeat RNA and C-terminal stretch (uN2CpolyG-dCT) in mice. Both uN2CpolyG and uN2CpolyG-dCT induced the formation of inclusions composed by filamentous materials and caused neurodegenerative phenotypes in mice, including impaired motor and cognitive performance, shortened lifespan, and pathological lesions such as white matter lesions, microgliosis, and astrogliosis. By contrast, the sole expression of GGC-repeat RNA was non-pathogenic. Combining with bulk and single-nuclei RNA-seq, we determined the common molecular signatures associated with expressing uN2CpolyG and uN2CpolyG-dCT in the brain, especially the up-regulation of inflammation and microglia markers whereas down-regulation of immediate early genes and splicing factors. Importantly, microglia-mediated inflammation was visualized in NIID patients by positron emission tomography, which correlated with white matter atrophy levels. Moreover, microglia ablation ameliorated neurodegeneration in uN2CpolyG-expressing mice but did not alter polyG inclusions. Together, these results demonstrate that polyG is critical for the pathogenesis of NIID, and microglia contribute to polyG-induced neurodegeneration.
 
Overall design To explore the transcriptomic alterations induced by polyG proteins, we performed bulk RNA-seq on cerebral cortices of AAV-injected mice.
 
Contributor(s) Zhong S
Citation(s) 39150562
Submission date Jun 05, 2024
Last update date Oct 03, 2024
Contact name Yangye Lian
E-mail(s) yangye_lian@sina.com
Organization name Zhongshan Hospital affiliated to Fudan University
Street address Xuhui No.180, Fenglin Road
City Shanghai
ZIP/Postal code 200032
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (16)
GSM8307726 Cx-3A6-1
GSM8307727 Cx-3A6-2
GSM8307728 Cx-3A6-3
Relations
BioProject PRJNA1120470

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE269183_all.fpkm_anno.xls.gz 5.1 Mb (ftp)(http) XLS
SRA Run SelectorHelp
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap