NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE269033 Query DataSets for GSE269033
Status Public on Jun 05, 2024
Title AGO2 silences mobile transposons in the nucleus of quiescent cells [RIP-seq]
Organism Mus musculus
Experiment type Other
Summary Argonaute 2 (AGO2) is a cytoplasmic component of the miRNA pathway with essential roles in development and disease. Yet, little is known about its regulation in vivo. Here, we show that in mouse quiescent cells, AGO2 localizes almost exclusively to the nucleus. In quiescent splenocytes, AGO2’s subcellular localization is modulated by the Pi3K-AKT-mTOR pathway, a well-established regulator of quiescence. Signaling through this pathway in proliferating cells promotes AGO2 cytoplasmic accumulation at least in part by stimulating the expression of TNRC6, an AGO2 binding partner in the miRNA pathway. In contrast, low signaling in quiescent cells enables AGO2 to accumulate in the nucleus where it binds to young mobile transposons co-transcriptionally. Loss of AGO2 in quiescent cells results in upregulation of transposon transcripts suggesting it performs functions analogous to those of PIWI in the germline. Our results point to an essential but previously unrecognized nuclear role for AGO2 during mammalian quiescence as part of a genome-defense system against transposable elements.
 
Overall design small RNA sequencing following immunopercipitation of AGO2 using an antibody against the HA epitope in Ago2HA/HA mice.
 
Contributor(s) Vidigal JA, Kumar M
Citation(s) 37985687
Submission date Jun 04, 2024
Last update date Jun 05, 2024
Contact name Joana A Vidigal
E-mail(s) joana.vidigal@nih.gov
Phone 240-760-6691
Organization name NIH/NCI
Department LBMB
Lab Vidigal
Street address 37 Convent Dr, Room 6056
City Bethesda
State/province MD
ZIP/Postal code 20892-0001
Country USA
 
Platforms (1)
GPL30172 NextSeq 2000 (Mus musculus)
Samples (8)
GSM8305390 IP_HA1_P
GSM8305391 IP_HA2_P
GSM8305392 IP_HA1_R
This SubSeries is part of SuperSeries:
GSE203049 AGO2 silences mobile transposons in the nucleus of quiescent cells
Relations
BioProject PRJNA1119997

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE269033_P_countTable.txt.gz 34.4 Kb (ftp)(http) TXT
GSE269033_R_countTable.txt.gz 34.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap