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| Status |
Public on Jan 01, 2013 |
| Title |
In vitro transcriptional profiling of Bacteroides thetaiotaomicron in lactose, galactose and human milk oligosaccharides |
| Platform organisms |
Bacteroides thetaiotaomicron; Bifidobacterium longum |
| Sample organism |
Bacteroides thetaiotaomicron |
| Experiment type |
Expression profiling by array
Third-party reanalysis
|
| Summary |
Investigation of the overall in vitro response of Bacteroides thetaiotaomicron to human milk oligosaccharides. Comparison with response to MM-lactose and MM-galactose (Analysis performed using as a baseline datasets GSM301635 and GSM301637 corresponding to Bacteroides thetaiotaomicron response in MM-Glucose)
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| |
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| Overall design |
In vitro transcriptional profiles of Bacteroides thetaiotaomicron obtained from biological duplicate cultures taken: (i) at middle log phase in minimal media galactose (MM-Gal) and minimal media lactose (MM-L) and (ii) at two timepoints during log phase in minimal media human milk oligosaccharides (MM-HMO).
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| |
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| Contributor(s) |
Marcobal A, Sonnenburg JL |
| Citation(s) |
22036470 |
| |
| Submission date |
Jan 20, 2011 |
| Last update date |
Jan 18, 2013 |
| Contact name |
Angela M Marcobal |
| E-mail(s) |
marcobal@stanford.edu
|
| Phone |
1-650-721-2961
|
| Fax |
1-650-498-7147
|
| URL |
http://sonnenburglab.stanford.edu/index.html
|
| Organization name |
Stanford University
|
| Department |
Microbiology and Immunology
|
| Lab |
Justin Sonnenburg lab
|
| Street address |
299 Campus Drive
|
| City |
Stanford |
| State/province |
California |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
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| Platforms (1) |
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| Samples (8)
|
| GSM658913 |
Bacteroides thetaiotaomicron_mid log phase_MM-Galactose_rep1 |
| GSM658914 |
Bacteroides thetaiotaomicron_mid log phase_MM-Galactose_rep2 |
| GSM658915 |
Bacteroides thetaiotaomicron_mid log phase_MM-Lactose_rep1 |
| GSM658916 |
Bacteroides thetaiotaomicron_mid log phase_MM-Lactose_rep2 |
| GSM658917 |
Bacteroides thetaiotaomicron_phase1_MM-HMO_rep1 |
| GSM658918 |
Bacteroides thetaiotaomicron_phase1_MM-HMO_rep2 |
| GSM658919 |
Bacteroides thetaiotaomicron_phase2_MM-HMO_rep1 |
| GSM658920 |
Bacteroides thetaiotaomicron_phase2_MM-HMO_rep2 |
|
| Relations |
| Reanalysis of |
GSM301635 |
| Reanalysis of |
GSM301637 |
| BioProject |
PRJNA136289 |
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