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| Status |
Public on Jul 31, 2024 |
| Title |
Pharmacological Repositioning of the transcription factor PU.1 |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
May 14, 2024 |
| Last update date |
Jul 31, 2024 |
| Contact name |
Samuel John Taylor |
| E-mail(s) |
samueljtaylor89@gmail.com
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| Organization name |
Albert Einstein College of Medicine
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| Street address |
1300 Morris Park Ave, Chanin building 601
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| City |
Bronx |
| State/province |
NY |
| ZIP/Postal code |
10461 |
| Country |
USA |
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| Platforms (3) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (91)
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| GSM6262722 |
MOLM13, 5uM DB2115, 12hr [MOLM_DB1] |
| GSM6262723 |
MOLM13, 5uM DB2115, 12hr [MOLM_DB2] |
| GSM6262724 |
MOLM13, 5uM DB2115, 12hr [MOLM_DB3] |
| GSM6262725 |
MOLM13, VEH, 12hr [MOLM_IgGV1] |
| GSM6262726 |
MOLM13, 5uM DB2115, 12hr [MOLM_IgGDB1] |
| GSM6262727 |
THP1, VEH, 12hr [THP1_VEH1] |
| GSM6262728 |
THP1, VEH, 12hr [THP1_VEH2] |
| GSM6262729 |
THP1, 5uM DB2115, 12hr [THP1_DB1] |
| GSM6262730 |
THP1, 5uM DB2115, 12hr [THP1_DB2] |
| GSM6262731 |
HL60, VEH, 12hr [HL60_VEH1] |
| GSM6262732 |
HL60, VEH, 12hr [HL60_VEH2] |
| GSM6262733 |
HL60, 5uM DB2115, 12hr [HL60_DB1] |
| GSM6262734 |
HL60, 5uM DB2115, 12hr [HL60_DB2] |
| GSM6262735 |
MV411, VEH, 12hr [MV411_VEH1] |
| GSM6262736 |
MV411, VEH, 12hr [MV411_VEH2] |
| GSM6262737 |
MV411, 5uM DB2115, 12hr [MV411_DB1] |
| GSM6262738 |
MV411, 5uM DB2115, 12hr [MV411_DB2] |
| GSM6262739 |
MV411, VEH, 12hr [MV411_IgG] |
| GSM6262740 |
THP1, VEH, 12hr [THP1_IgG] |
| GSM6262741 |
HL60, VEH, 12hr [HL60_IgG] |
| GSM6262742 |
MOLM13, 5uM DB2373, 12hr [MOLM_DB2373] |
| GSM6262743 |
MOLM13, 5uM DB2313, 12hr [MOLM_DB2313] |
| GSM6262744 |
MOLM13, 5uM DB2826, 12hr [MOLM_DB2826] |
| GSM6262745 |
MOLM13, 5uM DB2750, 12hr [MOLM_DB2750] |
| GSM6262746 |
MOLM13, 200nM Daunorubicin, 12hr [MOLM_Daun] |
| GSM6262747 |
MOLM13, 400nM Cytarabine, 12hr [MOLM_AraC] |
| GSM6262748 |
MOLM13, 200nM Daun, 12hr [MOLM_Daun_IgG] |
| GSM6262749 |
MOLM13, VEH, 12hr [MOLM_VEH_DaunAraC] |
| GSM6262750 |
MOLM13, 5uM DB2115, 1hr [MOLM_1hr_DB_1] |
| GSM6262751 |
MOLM13, 5uM DB2115, 1hr [MOLM_1hr_DB_2] |
| GSM6262752 |
MOLM13, 5uM DB2115, 4hr [MOLM_4hr_DB_1] |
| GSM6262753 |
MOLM13, 5uM DB2115, 4hr [MOLM_4hr_DB_2] |
| GSM6262754 |
MOLM13, 5uM DB2115, 12hr [MOLM_12hr_DB] |
| GSM6262755 |
MOLM13, VEH, 12hr [MOLM_VEH_timecourse] |
| GSM6262756 |
MOLM13, CRISPRd sgNon-targeting [sgNT_PU1_1] |
| GSM6262757 |
MOLM13, CRISPRd sgNon-targeting [sgNT_PU1_2] |
| GSM6262758 |
MOLM13, CRISPRd sgNon-targeting [sgNT_dCas9] |
| GSM6262759 |
MOLM13, CRISPRd targeting STRAP upstream region [sgSTRAP_dCas9] |
| GSM6262760 |
MOLM13, CRISPRd targeting STRAP upstream region [sgSTRAP_PU1_1] |
| GSM6262761 |
MOLM13, CRISPRd targeting STRAP upstream region [sgSTRAP_PU1_2] |
| GSM6262762 |
MOLM13, CLICKonCUT&TAG with DB2750 [CLICK1] |
| GSM6262763 |
MOLM13, CLICKonCUT&TAG with DB2750 [CLICK2] |
| GSM6262764 |
MOLM13, CLICKonCUT&TAG with DB2750 [CLICK3] |
| GSM8264925 |
MOLM13, VEH, ATAC-seq Rep1 |
| GSM8264926 |
MOLM13, VEH, ATAC-seq Rep2 |
| GSM8264927 |
MOLM13, VEH, ATAC-seq Rep3 |
| GSM8264928 |
MOLM13, 1hr DB2115, ATAC-seq Rep1 |
| GSM8264929 |
MOLM13, 1hr DB2115, ATAC-seq Rep2 |
| GSM8264930 |
MOLM13, 4hr DB2115, ATAC-seq Rep1 |
| GSM8264931 |
MOLM13, 4hr DB2115, ATAC-seq Rep2 |
| GSM8264932 |
MOLM13, 12hr DB2115, ATAC-seq Rep1 |
| GSM8264933 |
MOLM13, 12hr DB2115, ATAC-seq Rep2 |
| GSM8264934 |
MOLM13, VEH, 12hr, ChIP-seq |
| GSM8264935 |
MOLM13, DB2115, 12hr, ChIP-seq |
| GSM8264936 |
MOLM13, VEH, 12hr, RUNX1, Rep1 |
| GSM8264937 |
MOLM13, VEH, 12hr, RUNX1, Rep2 |
| GSM8264938 |
MOLM13, 5uM DB2115, 12hr, RUNX1 Rep1 |
| GSM8264939 |
MOLM13, 5uM DB2115, 12hr, RUNX1, Rep2 |
| GSM8264940 |
JURKAT, VEH, 12hr, RUNX1 |
| GSM8264941 |
JURKAT, 5uM DB2115, 12hr, RUNX1 |
| GSM8264942 |
JURKAT, VEH, 12hr, ELF1 |
| GSM8264943 |
JURKAT, 5uM DB2115, 12hr, ELF1 |
| GSM8264944 |
JURKAT, VEH, 12hr, GATA3 |
| GSM8264945 |
JURKAT, 5uM DB2115, 12hr, GATA3 |
| GSM8264946 |
JURKAT, VEH, 12hr, FLI1 |
| GSM8264947 |
JURKAT, 5uM DB2115, 12hr, FLI1 |
| GSM8264948 |
MOLM13, VEH, 12hr, ELF1 |
| GSM8264949 |
MOLM13, 5uM DB2115, 12hr, ELF1 |
| GSM8264950 |
MOLM13, VEH, 12hr, GABPA |
| GSM8264951 |
MOLM13, 5uM DB2115, 12hr, GABPA |
| GSM8264952 |
AML sample1, VEH, 12hr |
| GSM8264953 |
AML sample1, 5uM DB2115, 12hr |
| GSM8264954 |
AML sample2, VEH, 12hr |
| GSM8264955 |
AML sample2, 5uM DB2115, 12hr |
| GSM8264956 |
MOLM13, VEH, 12hr PRO-seq rep1 |
| GSM8264957 |
MOLM13, VEH, 12hr PRO-seq rep2 |
| GSM8264958 |
MOLM13, 5uM DB2115, 1hr PRO-seq rep1 |
| GSM8264959 |
MOLM13, 5uM DB2115, 1hr PRO-seq rep2 |
| GSM8264960 |
MOLM13, 5uM DB2115, 4hr PRO-seq rep1 |
| GSM8264961 |
MOLM13, 5uM DB2115, 4hr PRO-seq rep2 |
| GSM8264962 |
MOLM13, 5uM DB2115, 12hr PRO-seq rep1 |
| GSM8264963 |
MOLM13, 5uM DB2115, 12hr PRO-seq rep2 |
| GSM8264964 |
MOLM13, VEH, 20hr, RNA-seq rep1 |
| GSM8264965 |
MOLM13, VEH, 20hr, RNA-seq rep2 |
| GSM8264966 |
MOLM13, VEH, 20hr, RNA-seq rep3 |
| GSM8264967 |
MOLM13, DB2115, 20hr, RNA-seq rep1 |
| GSM8264968 |
MOLM13, DB2115, 20hr, RNA-seq rep2 |
| GSM8264969 |
MOLM13, DB2115, 20hr, RNA-seq rep3 |
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| This SuperSeries is composed of the following SubSeries:
|
| GSE206789 |
Pharmacological Repositioning of the transcription factor PU.1 [CUT&TAG; CLICKonCUT&TAG] |
| GSE267383 |
Pharmacological Repositioning of the transcription factor PU.1 [ATAC-seq] |
| GSE267384 |
Pharmacological Repositioning of the transcription factor PU.1 [ChIP-seq] |
| GSE267385 |
Pharmacological Repositioning of the transcription factor PU.1 [CUTnTag] |
| GSE267386 |
Pharmacological Repositioning of the transcription factor PU.1 [PRO-seq] |
| GSE267387 |
Pharmacological Repositioning of the transcription factor PU.1 [RNA-seq] |
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| Relations |
| BioProject |
PRJNA1111376 |
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