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| Status |
Public on Oct 28, 2024 |
| Title |
Protective effects of red filtered light during IVF: transcriptomic analysis of murine embryos and embryo-derived EVs |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Background: Light exposure of embryos during assisted reproduction affects embryo quality and implantation capacity in a wavelength dependent manner. We investigated the molecular mechanism of these light-induced changes through the comparative analysis of gene expression and regulatory miRNA profile of murine embryos cultured in dark environment and those exposed to white- or red filtered light. miRNA sequencing was used to assess the role of embryo-derived extracellular vesicles in the endometrium-embryo dialogue. Methods: In vitro cultured mouse embryos (3.5 dpc) were exposed to white or red filtered light. After 24 hours mRNA and miRNA content of the embryos as well as the miRNA content of embryo-derived extracellular vesicles were isolated and RNA-sequencing was performed. Differential expression analysis and functional enrichment analysis were used for evaluating the transcriptome results.Results: Light exposure caused transcriptomic changes in the embryos. White light upregulated apoptotic pathways, while red filtered light gave rise to the activation of regeneration pathways, including DNA repair mechanisms. Embryo-derived extracellular vesicles enclosed wavelength dependently unique miRNA cargos the target genes of which play a role in embryo implantation. In conclusion: white light upregulates apoptotic pathways, at both the transcriptome and regulatory miRNAs levels. Red filtration partially counterbalances these negative effects by shifting the cellular processes towards regeneration, including DNA repair mechanisms. Extracellular vesicles of light exposed embryos play a role in blastocyst-decidua communication through the horizontal transfer of regulatory miRNAs. Our data prove that light exposure during in vitro fertilization modifies cell function that might affect the outcome of implantation.
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| Overall design |
To investigate the effect of light exposure on the transcriptome of murine embryos, we have estabilished three treatment groups, embryos treated with white light, filtered red light and control.
We have sequenced the mRNA and miRNA isolated from the embryos and miRNA isolated from the embryo derived extracellular vesicles
We have performed differential expression analysis on the samples and functional enrichment to identify the significantly changed molecular pathways.
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| Contributor(s) |
Nagy B, Bognár Z, Csabai T, Fekete N, Buzás E, Kovács Á, Szekeres-Barthó J, Pállinger É |
| Citation missing |
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| Submission date |
May 01, 2024 |
| Last update date |
Oct 28, 2024 |
| Contact name |
Bence Nagy |
| E-mail(s) |
nagy.bencep94@gmail.com
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| Phone |
06 20 770 5375
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| Organization name |
Semmelweis University
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| Department |
Institute of Genetics, Cell- and Immunobiology
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| Lab |
FACS laboratory
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| Street address |
Nagyvárad tér 4
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| City |
Budapest |
| State/province |
Pest |
| ZIP/Postal code |
1089 |
| Country |
Hungary |
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| Platforms (1) |
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| Samples (28)
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| GSM8245164 |
embryo, control1, mrna |
| GSM8245165 |
embryo, control2, mrna |
| GSM8245166 |
embryo, control3, mrna |
| GSM8245167 |
embryo, white1, mrna |
| GSM8245168 |
embryo, white2, mrna |
| GSM8245169 |
embryo, white3, mirna |
| GSM8245170 |
embryo, white4, mirna |
| GSM8245171 |
embryo, control1, mirna |
| GSM8245172 |
embryo, control2, mirna |
| GSM8245173 |
embryo, red light1, mirna |
| GSM8245174 |
embryo, red ligh2, mirna |
| GSM8245175 |
embryo-ev, red light1, mirna |
| GSM8245176 |
embryo-ev, red light2, mirna |
| GSM8245177 |
embryo-ev, control1, mirna |
| GSM8245178 |
embryo-ev, control2, mirna |
| GSM8245179 |
embryo-ev, control3, mirna |
| GSM8245180 |
embryo-ev, control4, mirna |
| GSM8245181 |
embryo-ev, control5, mirna |
| GSM8245182 |
embryo-ev, white light1, mirna |
| GSM8245183 |
embryo-ev, white light2, mirna |
| GSM8245184 |
embryo-ev, white light3, mirna |
| GSM8245185 |
embryo-ev, control6, mirna |
| GSM8245186 |
embryo-ev, red light3, mirna |
| GSM8245187 |
embryo-ev, control7, mirna |
| GSM8245188 |
embryo-ev, white light, mirna |
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| Relations |
| BioProject |
PRJNA1106783 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE266335_EV_MIRNA_FINAL.txt.gz |
10.4 Kb |
(ftp)(http) |
TXT |
| GSE266335_emb_mirns_20231004.xlsx |
82.6 Kb |
(ftp)(http) |
XLSX |
| GSE266335_emb_mirns_20231030.txt.gz |
8.8 Kb |
(ftp)(http) |
TXT |
| GSE266335_mrna_results.csv.gz |
308.4 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
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