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Series GSE263341 Query DataSets for GSE263341
Status Public on Apr 10, 2024
Title ChIP-seq, RNA-seq and BS-seq for WT and osino80
Organism Oryza sativa Japonica Group
Experiment type Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
Overall design Refer to individual Series
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Submission date Apr 05, 2024
Last update date Apr 11, 2024
Contact name Wenhao Xie
Phone 18005879367
Organization name Fudan University
Department School of Life Science
Street address No. 2005, Songhu Road
City Shanghai
State/province Shanghai
ZIP/Postal code 200438
Country China
Platforms (2)
GPL13834 Illumina HiSeq 2000 (Oryza sativa Japonica Group)
GPL27860 Illumina NovaSeq 6000 (Oryza sativa Japonica Group)
Samples (75)
GSM8189821 osino80_rep1, BS-seq
GSM8189822 osino80_rep2, BS-seq
GSM8189823 osino80_rep3, BS-seq
This SuperSeries is composed of the following SubSeries:
GSE225483 BSseq for WT and osino80
GSE225484 ChIP-seq for OsINO80 location using YFP antibody, and ChIP-seq for WT and osino80 using H3, H2A, H2A.Z, H2Aub, H3K9me2, H3K4me2, H3K4me3, H3K27me3, and H3K36me3 antibodies
GSE225485 RNAseq for WT and osino80
BioProject PRJNA1096731

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE263341_RAW.tar 10.1 Gb (http)(custom) TAR (of BIGWIG, BW, COV)
SRA Run SelectorHelp

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