Data table |
GEO Sample |
GEO title |
cell line |
cell type |
antibody |
data processing step |
data processing step |
data processing step |
data processing step |
assembly |
processed data files format and content |
processed data files format and content |
GSM1443809 |
PPARgamma hMADS white rep1, day 19 |
hMADS-3 |
human adipose-derived stem cells |
anti-PPAR? (H-100, sc-7196; Santa Cruz) |
PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015). |
Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5. |
Peaks were detected using MACS3 v3.0.0b3. |
ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3. |
hg38 |
ChIP/Input ratio tracks for merged replicates in hg38 |
Narrow and broad peaks for merged replicates in hg38 |
GSM1443810 |
PPARgamma hMADS brite rep1, day 19 |
hMADS-3 |
human adipose-derived stem cells |
anti-PPAR? (H-100, sc-7196; Santa Cruz) |
PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015). |
Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5. |
Peaks were detected using MACS3 v3.0.0b3. |
ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3. |
hg38 |
ChIP/Input ratio tracks for merged replicates in hg38 |
Narrow and broad peaks for merged replicates in hg38 |
GSM1443811 |
PPARgamma hMADS white rep2, day 19 |
hMADS-3 |
human adipose-derived stem cells |
anti-PPAR? (H-100, sc-7196; Santa Cruz) |
PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015). |
Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5. |
Peaks were detected using MACS3 v3.0.0b3. |
ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3. |
hg38 |
ChIP/Input ratio tracks for merged replicates in hg38 |
Narrow and broad peaks for merged replicates in hg38 |
GSM1443812 |
PPARgamma hMADS brite rep2, day 19 |
hMADS-3 |
human adipose-derived stem cells |
anti-PPAR? (H-100, sc-7196; Santa Cruz) |
PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015). |
Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5. |
Peaks were detected using MACS3 v3.0.0b3. |
ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3. |
hg38 |
ChIP/Input ratio tracks for merged replicates in hg38 |
Narrow and broad peaks for merged replicates in hg38 |
GSM1537677 |
MED1 hMADS white rep1, day 19 |
hMADS-3 |
human adipose-derived stem cells |
MED1 (M-255; sc-8998; Santa Cruz) |
PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015). |
Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5. |
Peaks were detected using MACS3 v3.0.0b3. |
ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3. |
hg38 |
ChIP/Input ratio tracks for merged replicates in hg38 |
Narrow and broad peaks for merged replicates in hg38 |
GSM1537678 |
MED1 hMADS brite rep1, day 19 |
hMADS-3 |
human adipose-derived stem cells |
MED1 (M-255; sc-8998; Santa Cruz) |
PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015). |
Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5. |
Peaks were detected using MACS3 v3.0.0b3. |
ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3. |
hg38 |
ChIP/Input ratio tracks for merged replicates in hg38 |
Narrow and broad peaks for merged replicates in hg38 |
GSM1537679 |
MED1 hMADS white rep2, day 19 |
hMADS-3 |
human adipose-derived stem cells |
MED1 (M-255; sc-8998; Santa Cruz) |
PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015). |
Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5. |
Peaks were detected using MACS3 v3.0.0b3. |
ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3. |
hg38 |
ChIP/Input ratio tracks for merged replicates in hg38 |
Narrow and broad peaks for merged replicates in hg38 |
GSM1537680 |
MED1 hMADS brite rep2, day 19 |
hMADS-3 |
human adipose-derived stem cells |
MED1 (M-255; sc-8998; Santa Cruz) |
PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015). |
Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5. |
Peaks were detected using MACS3 v3.0.0b3. |
ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3. |
hg38 |
ChIP/Input ratio tracks for merged replicates in hg38 |
Narrow and broad peaks for merged replicates in hg38 |
GSM1443817 |
Input hMADS white rep1, day 19 |
hMADS-3 |
human adipose-derived stem cells |
None |
PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015). |
Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5. |
Peaks were detected using MACS3 v3.0.0b3. |
ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3. |
hg38 |
ChIP/Input ratio tracks for merged replicates in hg38 |
Narrow and broad peaks for merged replicates in hg38 |
GSM1443818 |
Input hMADS brite rep1, day 19 |
hMADS-3 |
human adipose-derived stem cells |
None |
PPARgamma and MED1 ChIP-Seq reads for white and brite adipocytes were downloaded from Gene Expression Omnibus (GEO) accession GSE59703 (Loft et al. 2015). |
Reads from replicates were merged and aligned to hg38 using Bowtie2 v2.4.5. |
Peaks were detected using MACS3 v3.0.0b3. |
ChIP/Input ratio tracks were generated using bamCompare in deepTools v3.5.3. |
hg38 |
ChIP/Input ratio tracks for merged replicates in hg38 |
Narrow and broad peaks for merged replicates in hg38 |