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Series GSE256180 Query DataSets for GSE256180
Status Public on Apr 26, 2024
Title Neuroendocrine cells initiate protective upper airway reflexes
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Airway neuroendocrine (NE) cells have been proposed to serve as specialized sensory epithelial cells that modulate respiratory behavior by communicating with nearby nerve endings. However, their functional properties and physiological roles in the healthy lung, trachea and larynx remain largely unknown. Here, we show that NE cells in these compartments possess distinct biophysical properties, but share sensitivity to the commonly aspirated noxious stimuli, water and acid. Moreover, we found that tracheal and laryngeal NE cells protect the airways by releasing ATP to activate purinoreceptive sensory neurons that initiate swallowing and expiratory reflexes. Our work uncovers striking molecular and biophysical diversity of NE cells across the airways and reveals mechanisms by which these specialized excitable cells serve as sentinels for activating a critical nociceptive circuit.
 
Overall design Compare expression between neuroenodcrine cells and epithelial cells in the lung, lower trachea, upper trachea, larynx. Cells were dissociated and FACs sorted from Ascl1-CreERT2;lsl-tdTomato mice with neuroendocrines cells defined as tdTomato+ and epithelial cells defined as EpCam+/tdTomato-. For a given tissue, NE and epithelial cells were FACs sorted in parallel (n=3 biological replicates). Lung cells were dissociated from one set of mice and tracheal/laryngeal NE cells were dissociated from another set.
 
Contributor(s) Seeholzer L, Julius D
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Submission date Feb 20, 2024
Last update date Apr 26, 2024
Contact name David Julius
Organization name UCSF
Street address 600 16th St
City San Francisc
State/province CA
ZIP/Postal code 94158
Country USA
 
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (20)
GSM8087011 Mouse1_PulmonaryNE_BioRep1
GSM8087012 Mouse2_PulmonaryNE_BioRep2
GSM8087013 Mouse3_PulmonaryNE_BioRep3
Relations
BioProject PRJNA1078380

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE256180_NE_Exp_TPM.csv.gz 449.5 Kb (ftp)(http) CSV
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Raw data are available in SRA

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