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Series GSE254669 Query DataSets for GSE254669
Status Public on Jul 05, 2024
Title RNA-Seq data of mouse retina, retinal pigment epithelium and cones
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The differentiation of cone photoreceptors, which mediate daylight vision and color vision, depends critically upon thyroid hormone.However, the route of access of blood-borne thyroid hormone to cones is undefined because cones reside behind the blood-retina barrier. This study uses genetic manipulation of a membrane transporter for thyroid hormone (Mct8) in mouse models to show a role for the retinal pigment epithelium (RPE), which forms the outer blood-retina barrier, in the control of cone differentiation.The results suggest a paracrine-like mechanism promotes thyroid hormone-mediated cone differentiation. The findings suggest that in addition to the transport of essential solutes and support of photoreceptor homeostasis, the RPE controls hormonal signaling required for cone differentiation.
 
Overall design RNA-seq analysis was performed on purified RPE cells, bulk retinal tissue, and also on isolated single cones from mouse genetic models. To distinguish between M-dominant and S-dominant cone types, samples were taken from superior and inferior areas of the retina, respectively. RPE samples were taken from superior and inferior areas of the eye to investigate the possibility of spatial distinctions in the transcriptome of RPE cells. An Mct8-knockout allele (Mct8-) was used to determine the total requirement for Mct8. The retinal transcriptome of a hypothyroid strain, Tshr-/-, was also analyzed. The role of the RPE was established by RPE-specific conditional deletion of a floxed Mct8 allele using an RPE-specific Cre driver transgene (Best1cre). As an X-linked gene, for females, the Mct8 flox allele was combined with a germline Mct8 null allele (Mct8 fl/null). The results of the study suggest that Mct8 thyroid hormone transporter in the RPE promotes differentiation of cones in the retina.
Web link https://www.pnas.org/doi/epub/10.1073/pnas.2402560121
 
Contributor(s) Liu Y, Ng L, Liu H, Heuer H, Forrest D
Citation(s) 39018199
Submission date Jan 31, 2024
Last update date Oct 11, 2024
Contact name Hong Liu
Organization name NIH
Department NIDDK
Lab LERB
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (3)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (254)
GSM8048170 2m_cone_ctrl_sup_01
GSM8048171 2m_cone_ctrl_sup_02
GSM8048172 2m_cone_ctrl_sup_03
Relations
BioProject PRJNA1071483

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE254669_2m_SingleCone_cpm.csv.gz 5.6 Mb (ftp)(http) CSV
GSE254669_Mct8_Best1cre_cko_P14_retina_cpm.csv.gz 6.4 Mb (ftp)(http) CSV
GSE254669_RPE_tpm.csv.gz 7.9 Mb (ftp)(http) CSV
GSE254669_WtMct8Tshr_retina_cpm.csv.gz 1.6 Mb (ftp)(http) CSV
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