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| Status |
Public on Jan 16, 2024 |
| Title |
IMPDH2 filaments protect from neurodegeneration in AMPD2 deficiency |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Metabolic dysregulation is one of the most common causes of pediatric neurodegenerative disorders. However, how the disruption of ubiquitous and essential metabolic pathways predominantly affect neural tissue remains unclear. Here we use a mouse model of AMPD2 deficiency to study cellular and molecular mechanisms that lead to selective neuronal vulnerability to purine metabolism imbalance. We show that AMPD deficiency in mice primarily leads to hippocampal dentate gyrus degeneration despite causing a generalized reduction of brain GTP levels. Remarkably, we uncover that neurodegeneration resistant regions of the hippocampus accumulate micron sized filaments of IMPDH2, the rate limiting enzyme in GTP synthesis. In contrast, IMPDH2 filaments are barely detectable in the dentate gyrus, which show a progressively neuroinflammation and neurodegeneration. Furthermore, using a human AMPD2 neural cell culture model, we show that blocking IMPDH2 polymerization with a dominant negative IMPDH2 variant impairs AMPD2 deficient neural progenitor growth. Together, our findings suggest that IMPDH2 polymerization prevents detrimental GTP deprivation caused by AMPD2 deficiency, providing resistance to neurodegeneration. This data opens the possibility of exploring the involvement of IMPDH2 assembly as a therapeutic intervention for neurodegeneration.
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| Overall design |
To determine why the hippocampus is more vulnerable to GTP depletion and IMPDH2 assembly in dKO mice, we conducted a mRNA sequencing (RNAseq) analysis of the three brain regions exhibiting different degrees of neurodegeneration and IMPDH2 aggregation: the hippocampus showing neurodegeneration and IMPDH2 filaments, the cerebral cortex with apparently no neurodegeneration and low density of IMPDH2 filaments and the cerebellum with no degeneration or IMPDH2 filaments.
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| Contributor(s) |
Flores-Mendez M, Ohl L, Roule T, Zhou Y, A Tintos-Hernandez J, Walsh K, Ortiz-Gonzalez X, Akizu N |
| Citation(s) |
38328116, 39075237 |
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| Submission date |
Jan 11, 2024 |
| Last update date |
Oct 09, 2024 |
| Contact name |
Naiara Akizu |
| E-mail(s) |
aquizun@chop.edu
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| Organization name |
Children's Hospital of Philadelphia
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| Department |
Pathology And Lab Medicine
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| Lab |
Akizu Lab
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| Street address |
3501 Civic Center Blvd
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| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (18)
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| GSM8012888 |
cerebellum, dKO, biol rep 1 |
| GSM8012889 |
cerebellum, dKO, biol rep 2 |
| GSM8012890 |
cerebellum, dKO, biol rep 3 |
| GSM8012891 |
cortex, Ctrl, biol rep 1 |
| GSM8012892 |
cortex, Ctrl, biol rep 2 |
| GSM8012893 |
cortex, Ctrl, biol rep 3 |
| GSM8012894 |
cortex, dKO, biol rep 1 |
| GSM8012895 |
cortex, dKO, biol rep 2 |
| GSM8012896 |
cortex, dKO, biol rep 3 |
| GSM8012897 |
hippocampus, Ctrl, biol rep 1 |
| GSM8012898 |
hippocampus, Ctrl, biol rep 2 |
| GSM8012899 |
hippocampus, Ctrl, biol rep 3 |
| GSM8012900 |
hippocampus, dKO, biol rep 1 |
| GSM8012901 |
hippocampus, dKO, biol rep 2 |
| GSM8012902 |
hippocampus, dKO, biol rep 3 |
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| Relations |
| BioProject |
PRJNA1063698 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE253045_RAW.tar |
730.7 Mb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
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