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Series GSE252987 Query DataSets for GSE252987
Status Public on Jan 17, 2024
Title Lefamulin targets ILF3 to overcome targeted therapy resistance in hepatocellular carcinoma []
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Acquired resistance represents a critical clinical challenge to molecular targeted therapies such as tyrosine kinase inhibitors (TKIs) treatment in hepatocellular carcinoma (HCC). Therefore, it is urgent to explore new mechanisms and therapeutics that can overcome or delay resistance. Here, we identified a U.S. Food and Drug Administration (FDA)-approved pleuromutilin antibiotic that overcomes sorafenib resistance in HCC cell lines, cell line-derived xenograft (CDX) and hydrodynamic injection mouse models. We demonstrated that lefamulin targets and binds Interleukin Enhancer-binding Factor 3 (ILF3) to inhibit sorafenib-induced mitochondrial ribosomal protein L12 (MRPL12) upregulation. Mechanistically, lefamulin directly binds to Ala-99 of ILF3 and interferes with acetyltransferase general control non-depressible 5 (GCN5) and CREB binding protein (CBP) mediated acetylation of Lys-100, which disrupting the ILF3-mediated transcription of MRPL12 and subsequent mitochondrial biogenesis. Clinical data further confirmed that high ILF3 or MRPL12 expression was associated with poor survival and targeted therapy efficacy in HCC. Conclusively, our findings suggest that ILF3 is a potential therapeutic target for overcoming resistance to TKIs, and lefamulin may be a novel combination therapy strategy for HCC treatment with sorafenib and regorafenib.
 
Overall design To investigate how lefamulin overcomes sorafenib resistance in HCC, we conducted RNA sequencing (RNA-seq) on the HepG2-derived xenografts of vehicle control, sorafenib, lefamulin, and the combination treated Balb/c nude mice
 
Contributor(s) Zheng Y, Ye S, Huang S, Cheng Y, Zhang Y, Leng Y, He M, Wu E, Chen J, Kong L, Zhang H
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Submission date Jan 10, 2024
Last update date Jan 17, 2024
Contact name ying zheng
E-mail(s) zhengying@stu.cpu.edu.cn
Organization name China pharmaceutical university
Street address 639 Longmian Avenue, Jiangning District
City nanjing
ZIP/Postal code 210009
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM8011922 HepG2-derived xenograft-ctrl-1
GSM8011923 HepG2-derived xenograft-ctrl-2
GSM8011924 HepG2-derived xenograft-ctrl-3
Relations
BioProject PRJNA1063443

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE252987_gene_fpkm.txt.gz 3.5 Mb (ftp)(http) TXT
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Raw data are available in SRA

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