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Series GSE25103 Query DataSets for GSE25103
Status Public on Sep 01, 2011
Title Affymetrix SNP array data for oral squamous cell carcinoma
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary In order to identify biomarkers that contribute to genetic causes of OSCC, we attempt to identify copy number variation regions (CNV) in patients with OSCC. We identified and confirmed the clinical significance of amplification regions scattered from 8q22.2 to 8q24.3.
Overall design Affymetrix SNP arrays were performed according to the manufacturer's directions on DNA extracted from normal oral tissues and OSCC specimens.
Copy number analysis of Affymetrix SNP 6.0 arrays was performed for 112 OSCC specimens and 10 non-cancerous samples.
Contributor(s) Peng C, Liao C, Chen Y, Cheng A, Juang J, Tsai C, Hsieh W, Yen T
Citation(s) 21853135, 26087196
Submission date Nov 03, 2010
Last update date Oct 09, 2019
Contact name Chien-Hua Peng
Organization name Chang Gung Memorial Hospital
Street address No. 5, Fu-Hsing ST.
City Taoyuan
ZIP/Postal code 33305
Country Taiwan
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (122)
GSM617660 OSCC tumor_OR0265
GSM617661 OSCC tumor_OR0752
GSM617662 OSCC tumor_OR0811
This SubSeries is part of SuperSeries:
GSE25104 Expression and SNP array data for oral squamous cell carcinoma
BioProject PRJNA142781

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25103_CNV_data.txt.gz 628.4 Mb (ftp)(http) TXT
GSE25103_RAW.tar 5.5 Gb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file
Processed data are available on Series record

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