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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 03, 2024 |
| Title |
Histone serotonylation regulates ependymoma tumorigenesis through neurodevelopmental pathways [ChIP-Seq] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
To profile H3K4me3Q5Ser (5HT-H3) distribution in mouse ZFTA-RELA ependymoma tumors
Furthermore, we also sought to examine H3K27ac and H3K27me3 distribution in mouse ZFTA-RELA ependymoma versus ETV5 overexpressing tumors
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| Overall design |
Chromatin immunoprecipitation (ChIP-Seq) for 5HT-H3, H3K27ac, H3K27me3 and ETV5 in mouse ZFTA-RELA ependymoma tumors
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| Contributor(s) |
Chen H, Deneen B |
| Citation(s) |
39085609 |
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| Submission date |
Oct 23, 2023 |
| Last update date |
Sep 02, 2024 |
| Contact name |
Hsiao-Chi Chen |
| Organization name |
Baylor College of Medicine
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| Lab |
Benjamin Deneen
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| Street address |
1 Baylor Plaza
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| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (23)
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| GSM7854124 |
mouse ZFTA-RELA ependymoma tumor, input (for 5HTH3), rep1 |
| GSM7854125 |
mouse ZFTA-RELA ependymoma tumor, ChIP-5HTH3, rep1 |
| GSM7854126 |
mouse ZFTA-RELA ependymoma tumor, input (for 5HTH3), rep2 |
| GSM7854127 |
mouse ZFTA-RELA ependymoma tumor, ChIP-5HTH3, rep2 |
| GSM7854128 |
mouse ZFTA-RELA ependymoma tumor, input (for 5HTH3), rep3 |
| GSM7854129 |
mouse ZFTA-RELA ependymoma tumor, ChIP-5HTH3, rep3 |
| GSM7854130 |
mouse ZFTA-RELA ependymoma tumor, input (for H3K27ac), rep1 |
| GSM7854131 |
mouse ZFTA-RELA ependymoma tumor, ChIP-H3K27ac, rep1 |
| GSM7854132 |
mouse ZFTA-RELA ependymoma tumor, input (for H3K27ac), rep2 |
| GSM7854133 |
mouse ZFTA-RELA ependymoma tumor, ChIP-H3K27ac, rep2 |
| GSM7854134 |
mouse ZFTA-RELA ependymoma tumor, ETV5 overexpression, input (for H3K27ac), rep2 |
| GSM7854135 |
mouse ZFTA-RELA ependymoma tumor, ETV5 overexpression, ChIP-H3K27ac, rep2 |
| GSM7854136 |
mouse ZFTA-RELA ependymoma tumor, ETV5 overexpression, input (for H3K27ac), rep1 |
| GSM7854137 |
mouse ZFTA-RELA ependymoma tumor, ETV5 overexpression, ChIP-H3K27ac, rep1 |
| GSM7854138 |
mouse ZFTA-RELA ependymoma tumor, input (for H3K27me3), rep1 |
| GSM7854139 |
mouse ZFTA-RELA ependymoma tumor, ChIP-H3K27me3, rep1 |
| GSM7854140 |
mouse ZFTA-RELA ependymoma tumor, input (for H3K27me3), rep2 |
| GSM7854141 |
mouse ZFTA-RELA ependymoma tumor, ChIP-H3K27me3, rep2 |
| GSM7854142 |
mouse ZFTA-RELA ependymoma tumor, ETV5 overexpression, input (for H3K27me3), rep1 |
| GSM7854143 |
mouse ZFTA-RELA ependymoma tumor, ETV5 overexpression, ChIP-H3K27me3, rep1 |
| GSM7854144 |
mouse ZFTA-RELA ependymoma tumor, ETV5 overexpression, input (for H3K27me3), rep2 |
| GSM7854145 |
mouse ZFTA-RELA ependymoma tumor, ETV5 overexpression, ChIP-H3K27me3, rep2 |
| GSM8114602 |
mouse ZFTA-RELA ependymoma tumor, ChIP-ETV5 |
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| This SubSeries is part of SuperSeries: |
| GSE246033 |
Histone serotonylation regulates ependymoma tumorigenesis through neurodevelopmental pathways |
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| Relations |
| BioProject |
PRJNA1031369 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE246032_RAW.tar |
4.6 Gb |
(http)(custom) |
TAR (of BIGWIG, BW) |
SRA Run Selector |
| Raw data are available in SRA |
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