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Series GSE245525 Query DataSets for GSE245525
Status Public on Jul 11, 2024
Title KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ChIP-seq]
Organism Solanum lycopersicum
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Employing high-throughput sequencing and advanced microscopy techniques, we explored twenty-six histone modifications and Pol II distribution landscape in tomato (Solanum lycopersicum). Our findings revealed a comprehensive epigenetic landscape, uncovering distinct chromatin states associated with heterochromatin formation and gene silencing, allowing for the classification of genomic regions.
 
Overall design Comparative analysis of twenty-six histone modifications and Pol II ChIP-seq data for tomato M82 wild type
 
Contributor(s) Brik Chaouche R, An J, Wang Q, Huang Y, Benhamed M, Latrasse D
Citation(s) 38968127
Submission date Oct 16, 2023
Last update date Jul 12, 2024
Contact name Jing An
Organization name Universite Paris Saclay
Street address 630 Rue Noetzlin
City Paris
ZIP/Postal code 91190
Country France
 
Platforms (1)
GPL21762 Illumina NextSeq 500 (Solanum lycopersicum)
Samples (28)
GSM7844490 M82 ChIP-seq_Pol2 Rep1
GSM7844491 M82 ChIP-seq_H3K4ac Rep1
GSM7844492 M82 ChIP-seq_H3K4me1 Rep1
This SubSeries is part of SuperSeries:
GSE245529 KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac
Relations
BioProject PRJNA1028669

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Supplementary file Size Download File type/resource
GSE245525_RAW.tar 4.0 Gb (http)(custom) TAR (of BIGWIG, BROADPEAK, NARROWPEAK)
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Raw data are available in SRA

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