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Series GSE245519 Query DataSets for GSE245519
Status Public on Apr 03, 2024
Title Inter-individual variations in circadian misalignment-induced NAFLD pathophysiology in mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Pathological consequences of circadian misalignment, such as shift work, show considerable individual differences, but the lack of mechanistic understanding hinders precision prevention to prevent and mitigate disease symptoms. Here, we employed an integrative approach involving physiological, transcriptional, and histological phenotypes to examine inter-individual differences in pathological progression during the pre-symptomatic stage, prior to the development of irreversible diseases under chronic circadian misalignment, using wild-type mice exposed to chronic jet-lag (CJL). We observed that CJL markedly increased the prevalence of hepatic steatosis with pronounced inter-individual differences. Stratification of individual mice based on CJL-induced hepatic transcriptomic signature, validated by histopathological analysis, pinpoints dysregulation of lipid metabolism. Moreover, the period and power of intrinsic behavioral rhythms was found to significantly correlate with CJL-induced gene signatures. Together, our results suggest circadian rhythm robustness of the animals contribute to inter-individual variations in pathogenesis of circadian misalignment-induced diseases, and arise the possibility that these physiological indicators may be available for predictive hallmarks of circadian rhythm disorders.
 
Overall design Examination of poly(A)+ enriched RNAs in mouse liver exposed to chronic circadian misalignment in addition to control. Wild-type male C57BL/6J mice were exposed to chronic jet lag characterized by 8-hour advance every 4 days (referred to as ADV paradigm) for 47 weeks, whereas the control group (LD) were maintained under the normal 12h:12h light-dark condition.
 
Contributor(s) Koike N, Umemura Y, Yagita K
Citation(s) 38533453
Submission date Oct 16, 2023
Last update date Apr 04, 2024
Contact name Kazuhiro Yagita
E-mail(s) kyagita@koto.kpu-m.ac.jp
Organization name Kyoto Prefectural University of Medicine
Street address Kawaramachi-Hirokoji, Kamigyo-ku
City Kyoto
ZIP/Postal code 602-8566
Country Japan
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (41)
GSM7844335 A01
GSM7844336 A02
GSM7844337 A03
Relations
BioProject PRJNA1028642

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE245519_FPKM_Liver_wheel_knownCanonical2020_exons.txt.gz 9.1 Mb (ftp)(http) TXT
GSE245519_RAW.tar 2.5 Gb (http)(custom) TAR (of BW)
GSE245519_RawReadCounts_Liver_wheel_knownCanonical2020_exons.txt.gz 3.9 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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