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Series GSE243587 Query DataSets for GSE243587
Status Public on Dec 06, 2023
Title Cell-based models of ‘Cytokine Release Syndrome’ endorse CD40L and GM-CSF knockout in CAR T cells as mitigation strategy
Organism Homo sapiens
Experiment type Other
Summary Chimeric antigen receptor (CAR) T cells are engineered lymphocytes able to recognize and eradicate cancer cells. While CAR T cell therapy has shown promising outcomes in patients with hematologic malignancies, it can cause undesirable side-effects such as cytokine release syndrome (CRS). CRS is triggered by CAR T cell-based activation of monocytes, which are stimulated via the CD40L–CD40R axis or via uptake of GM-CSF to secrete pro-inflammatory cytokines. Mouse models have been used to model CRS but they are labor intensive and not amenable to screening approaches. To overcome this challenge, we established two cell-based CRS in vitro models that entail the co-culturing of leukemic B cells with CD19-targeting CAR T cells and primary monocytes from the same donor. Upon antigen encounter, CAR T cells upregulated CD40L and GM-CSF which stimulated the monocytes to release IL-6. To endorse these models, we demonstrated that neutralizing antibodies or genetic disruption of the CD40L and/or CSF2 loci in CAR T cells using CRISPR-Cas technology significantly reduced IL-6 secretion by bystander monocytes without affecting the cytolytic activity of the engineered lymphocytes. Overall, our cell-based models were able to recapitulate CRS in vitro, allowing us to validate mitigation strategies based on antibodies or genome editing.
 
Overall design CAR T cells, produced via lentiviral transduction were treated with two RNP complexes (Cas9) targeting close sites within CSF2 and/or CD40L. CAST-Seq was performed on cells treated with either one or both nuclease pairs looking at the targeted loci in each sample to assess the formation of stable translocations between the on-target site potential off-target sites.
 
Contributor(s) Dibas A, Rhiel M, Andrieux G, Boerries M, Alzubi J, Cathomen T
Citation(s) 37947658
Submission date Sep 19, 2023
Last update date Dec 06, 2023
Contact name Geoffroy Andrieux
Organization name University clinics Freiburg
Street address Breisacherstr 153
City Freiburg
ZIP/Postal code 79110
Country Germany
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (12)
GSM7791573 UT-CD40L rep1
GSM7791574 UT-CD40L rep2
GSM7791575 CD40L-KO rep1
Relations
BioProject PRJNA1018974

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE243587_CD40L-KO_FINAL.xlsx 101.6 Kb (ftp)(http) XLSX
GSE243587_Double-KO-CD40L_FINAL.xlsx 135.9 Kb (ftp)(http) XLSX
GSE243587_Double-KO-GMCSF_FINAL.xlsx 159.8 Kb (ftp)(http) XLSX
GSE243587_GMCSF-KO_FINAL.xlsx 93.4 Kb (ftp)(http) XLSX
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Raw data are available in SRA

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