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Series GSE243203 Query DataSets for GSE243203
Status Public on Nov 02, 2023
Title Depletion of mRNA cap-binding protein eIF4E1 drives bradyzoite formation in Toxoplasma gondii [CLIP-seq]
Organism Toxoplasma gondii
Experiment type Other
Summary Ingestion of Toxoplasma gondii results in life-long infection due to its ability to convert from the rapidly disseminating tachyzoite stage to the chronic, encysted bradyzoite stage. The control of mRNA translation has been suggested to play a key role in the signaling required to trigger bradyzoite formation. In eukaryotes, translational control primarily operates at two key points during the assembly of translation initiation factors. The phosphorylation of eIF2 affects mRNA start codon recognition and promotes differentiation in a variety of parasites. Modulating eIF4F function is the second pan-eukaryote regulatory point but remains unexplored in Toxoplasma. Here, we uncover the role that eIF4F-centric regulation plays in regulating bradyzoite formation by targeting the cap-binding subunit, eIF4E1. We discover that eIF4E1 coordinates two eIF4F complexes and binds the 5’-end of all mRNAs transcribed in tachyzoites, many of which show evidence of stemming from heterogenous transcriptional start sites. Together, this indicates that eIF4E1 is the predominant cap-binding protein in Toxoplasma tachyzoites. We also demonstrate that eIF4E1 knockdown or its chemical inhibition triggers the efficient formation of bradyzoites in the absence of other stresses and that stress-induced bradyzoites reduce their eIF4E1 expression. This study unearths a role for eIF4F-centric translational control in controlling Toxoplasma differentiation, suggesting that control of cap-dependent translation regulates the process of bradyzoite formation.
 
Overall design expression changes at the transcriptional and translational levels upon IAA-induced eIF4E1 depletion in Toxoplasma gondii tachyzoites
 
Contributor(s) Holmes MJ, Sullivan WJ Jr
Citation(s) 38747593
NIH grant(s)
Grant ID Grant title Affiliation Name
R21 AI167662 Regulation of cyst formation in the AIDS opportunistic pathogen Toxoplasma INDIANA UNIVERSITY William J Sullivan
R21 AI167662 Regulation of cyst formation in the AIDS opportunistic pathogen Toxoplasma INDIANA UNIVERSITY Ronald C Wek
R01 AI172752 Translation initiation factors driving persistence of Toxoplasma gondii bradyzoites in neurons INDIANA UNIVERSITY William J Sullivan
R01 AI172752 Translation initiation factors driving persistence of Toxoplasma gondii bradyzoites in neurons INDIANA UNIVERSITY Ronald C Wek
Submission date Sep 14, 2023
Last update date Jun 26, 2024
Contact name Michael James Holmes
E-mail(s) holmesmi@iu.edu
Organization name Indiana University School of Medicine
Department Pharmacology & Toxicology
Street address 635 Barnhill Drive
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platforms (1)
GPL23466 Illumina HiSeq 4000 (Toxoplasma gondii)
Samples (12)
GSM7780660 eIF4E1_CLIPseq_rep1
GSM7780661 eIF4E1_CLIPseq_rep2
GSM7780662 eIF4E1_CLIPseq_rep3
This SubSeries is part of SuperSeries:
GSE243207 Depletion of mRNA cap-binding protein eIF4E1 drives bradyzoite formation in Toxoplasma gondii
Relations
BioProject PRJNA1017398

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE243203_4E1_peaks.bed.gz 85.7 Kb (ftp)(http) BED
GSE243203_4E2_peaks.bed.gz 38.3 Kb (ftp)(http) BED
GSE243203_RAW.tar 98.0 Mb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA

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