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Series GSE24302 Query DataSets for GSE24302
Status Public on Oct 18, 2010
Title Lai-1182-4H/BS22/BS23
Project modENCODE
Organism Drosophila melanogaster
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary modENCODE_submission_3742
This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design EXPERIMENT TYPE: RNA-seq. BIOLOGICAL SOURCE: Cell Line: 1182-4H; Tissue: embryo-derived cell-line; Developmental Stage: late embryonic stage; Genotype: mh; Sex: Unknown; EXPERIMENTAL FACTORS: Cell Line 1182-4H; Replicate type: biological
Web link http://www.modencode.org
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
 
Contributor(s) Lai E
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA168994
Submission date Sep 23, 2010
Last update date May 15, 2019
Contact name DCC modENCODE
E-mail(s) help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
Samples (2)
GSM609221 1182-4H V026/BS23 (Celniker/RNA:39) rep1 extraction1_seq1 aliquote 1
GSM980238 1182-4H V147/BS22 (Celniker/RNA:37) rep2 extraction2_seq1 aliquote 1
Relations
SRA SRP003837

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE24302_Lai_1182-4H_V026_V147.sdrf.txt.gz 459 b (ftp)(http) TXT
GSE24302_RAW.tar 98.7 Mb (http)(custom) TAR (of SAM)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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