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| Status |
Public on Sep 04, 2023 |
| Title |
miR-eCLIP of miR181-5p in mouse thymocytes. |
| Organism |
Mus musculus |
| Experiment type |
Other
|
| Summary |
Enriched eCLIP combined with miR-181a/b-1 deficiency allows for the stringent identification of 6,729 miR-181 MREs in murine thymocytes.
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| Overall design |
miR-eCLIP experiment was setup and perforemd by Eclisebio. The experiment consists of four conditions: an Ago2 IP, an Ago2 IP with miR181 knockout, an miR181 IP on top of the Ago2 IP also without and with miR181 knockout.
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| Contributor(s) |
Verheyden N, Klostermann M, Zarnack K, Krueger A |
| Citation(s) |
38783381 |
| |
| Submission date |
Aug 30, 2023 |
| Last update date |
Sep 11, 2024 |
| Contact name |
Andreas Krueger |
| E-mail(s) |
andreas.krueger@immu.bio.uni-giessen.de
|
| Organization name |
Justus Liebig University
|
| Lab |
Molecular Immunology
|
| Street address |
Schubertstr. 81
|
| City |
Gießen |
| ZIP/Postal code |
35392 |
| Country |
Germany |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (18)
|
| GSM7745447 |
miR-eCLIP Ago2IP with miR181a/b-1-KO sample1 |
| GSM7745448 |
miR-eCLIP Ago2IP with miR181a/b-1-KO sample2 |
| GSM7745449 |
miR-eCLIP Ago2IP with miR181a/b-1-KO sample3 |
| GSM7745450 |
miR-eCLIP_InputControl_Ago2IP_s1 |
| GSM7745451 |
miR-eCLIP_InputControl_Ago2IP_s2 |
| GSM7745452 |
miR-eCLIP_InputControl_Ago2IP_s3 |
| GSM7745453 |
miR-eCLIP_InputControl_Ago2IP_miR181KO_s1 |
| GSM7745454 |
miR-eCLIP_InputControl_Ago2IP_miR181KO_s2 |
| GSM7745455 |
miR-eCLIP_InputControl_Ago2IP_miR181KO_s3 |
| GSM7745456 |
miR-eCLIP miR181-enriched sample1 |
| GSM7745457 |
miR-eCLIP miR181-enriched sample2 |
| GSM7745458 |
miR-eCLIP miR181-enriched sample3 |
| GSM7745459 |
miR-eCLIP miR181-enriched with miR181a/b-1-KO sample1 |
| GSM7745460 |
miR-eCLIP miR181-enriched with miR181a/b-1-KO sample2 |
| GSM7745461 |
miR-eCLIP miR181-enriched with miR181a/b-1-KO sample3 |
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| This SubSeries is part of SuperSeries: |
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| Relations |
| BioProject |
PRJNA1010731 |
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