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Series GSE241210 Query DataSets for GSE241210
Status Public on Aug 18, 2023
Title Iron and heme regulated genes in Bacteroides fragilis 638R Dfur mutant
Organism Bacteroides fragilis 638R
Experiment type Expression profiling by array
Summary Genome expression study of Bacteroides fragilis strain 638R comparing an fur deletion mutant with the wild-type strain grown in minimal defined media with iron-replete, iron-limiting, heme-replete and heme-limiting conditions.
The construction of the fur mutant analyzed in this study was described in Robertson KP, Smith CJ, Gough AM, Rocha ER. 2006. Characterization of Bacteroides fragilis hemolysins and regulation and synergistic interactions of HlyA and HlyB. Infect Immun. 74:2304-2316.
 
Overall design Twelve chip study with 8 technical replicate on each chip comparing iron and heme regulated genes in the wild-type strain and fur deletion mutant.
 
Contributor(s) Smith CJ, Rocha ER
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Submission date Aug 18, 2023
Last update date Aug 24, 2023
Contact name Edson R Rocha
E-mail(s) rochae@ecu.edu
Phone 252-744-9563
Organization name East Carolina University Brody School of Medicine
Department M
Lab Biotech Bldg. Room 130
Street address 600 Moye Blvd.
City Greenville
State/province NC
ZIP/Postal code 27834
Country USA
 
Platforms (1)
GPL15788 NimbleGen Bacteroides fragilis 638R custom array [091125_Bfra_CJS_exp]
Samples (12)
GSM7719419 BF638R_WT High iron Rep1
GSM7719420 BF638R_WT High iron Rep2
GSM7719421 BF638R_WT Low iron Rep1
Relations
BioProject PRJNA1006733

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE241210_RAW.tar 95.8 Mb (http)(custom) TAR (of CALLS, PAIR, TXT)
Processed data included within Sample table
Processed data provided as supplementary file

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