GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE240646 Query DataSets for GSE240646
Status Public on Apr 17, 2024
Title First exploration of the altered microbial gut-lung axis in the pathogenesis of human refractory chronic cough
Organism Homo sapiens
Experiment type Other
Summary v3-v4 16S rRNA sequencing was used to characterize both gut and oral microbiota composition of RCC (refractory chronic cough) patients and matched healthy controls (HC). The groups are matched in age and gender.
Overall design Total DNA was extracted from stool and saliva of 10 patients and 10 healthy subjects, amplified to collect amplicons of variable V3–V4 regions (primers 341F and 805R) of the bacterial 16s rRNA gene and sequenced with MiSeq (2x300bp) Illumina platform.
Contributor(s) Ramazzotti M, Amedei A, Baldi S, Di Gloria L
Citation(s) 38526572
Submission date Aug 11, 2023
Last update date Apr 17, 2024
Contact name Matteo Ramazzotti
Organization name University of Florence
Department Experimental and Clinical Biomedical Sciences
Street address viale Morgagni 50
City Firenze
ZIP/Postal code 50134
Country Italy
Platforms (1)
GPL15520 Illumina MiSeq (Homo sapiens)
Samples (39)
GSM7706712 Microbiota of Stool from subject HC_1
GSM7706713 Microbiota of Stool from subject HC_2
GSM7706714 Microbiota of Stool from subject HC_3
BioProject PRJNA1004563

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE240646_dna-sequences.fasta.gz 293.9 Kb (ftp)(http) FASTA
GSE240646_feature_abundance_table.tsv.gz 20.6 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap