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Series GSE239352 Query DataSets for GSE239352
Status Public on Aug 01, 2024
Title Transcription factor KLF2 regulates cell fate decision of stem cells in infantile hemangioma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary As the most common vascular tumor during infancy, infantile hemangioma (IH) is clinically featured by a rapid proliferation phase of disorganized blood vessels and a subsequent spontaneous involution phase. Infantile hemangioma arises from a unique type of multipotent stem cells called hemangioma stem cells (HemSCs), which could differentiate into endothelial cells, pericytes and adipocytes in IH. However, the underlying mechanisms that regulate the cell fate determination of HemSCs are not well elucidated. Here, we identified KLF2 as a candidate transcription factor involved in the control of HemSCs differentiation. KLF2 was expressed in endothelial cells in proliferating IH and its expression diminished in adipocytes in involuting IH. KLF2 regualtes the proliferation, apopotosis and cell cycle progression in HemSCs. Moreover, KLF2 is a critical regulator in HemSCs that control their differentiation direction between endothelial cells and adipocytes. Knockdown of KLF2 inhibited the formation of blood vessels in vivo while accelerated the progress of adipogenesis. RNA-seq analysis suggested an induction of pro-adipogenic transcriptome in HemSCs upon KLF2 knockdown. Our data showed that KLF2 exhibited pleiotropic effects in regulating the biological behaviours of HemSCs, and was involved in the progression and involution of IH via determining the cell fate of HemSCs.
 
Overall design In this study ,we performed RNA-seq in KLF2 knockdown HemSCs (shKLF2) and control HemSCs (shControl) to dissect the transcriptional alterations in response to KLF2.
 
Contributor(s) Zheng J, Bian Q, Chen Q
Citation(s) 38382868
Submission date Jul 26, 2023
Last update date Oct 31, 2024
Contact name Qian Bian
E-mail(s) qianbian@shsmu.edu.cn
Phone 86-21-3845-2656
Organization name Shanghai Jiao Tong University School of Medicine
Department Shanghai Institute of Precision Medicine, Ninth People’s Hospital
Street address Jinzun Road No.115
City Shanghai
ZIP/Postal code 200011
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (6)
GSM7663533 shControl_rep1
GSM7663534 shControl_rep2
GSM7663535 shControl_rep3
Relations
BioProject PRJNA998877

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE239352_RAW.tar 1.4 Mb (http)(custom) TAR (of TXT)
GSE239352_shKLF2_vs_shControl_DEGs.csv.gz 54.7 Kb (ftp)(http) CSV
GSE239352_shKLF2_vs_shControl_FPKM_Matrix.csv.gz 757.4 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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