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Series GSE23867 Query DataSets for GSE23867
Status Public on Oct 28, 2010
Title Epigenetic profile of the Plasmodium falciparum intraerythrocytic cycle
Organism Plasmodium falciparum 3D7
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This experiment characterizes the localisation of H2A.Z, H3K9ac and H3K4me3 in the epigenome of the human malaria parasite, P. falciparum at 4 different stages of intraerythrocytic development.
 
Overall design Examination of H2A.Z, H3K9ac, H3K4me3 and mono-nucleosomal input in 3D7 strain at 4 different stages and H2A in 3D7 strain at 1 stage using native ChIP-seq
 
Contributor(s) Bartfai R, Hoeijmakers WA, Salcedo-Amaya AM, Smits AH, Janssen-Megens E, Kaan A, Treeck M, Gilberger T, Fran├žoijs K, Stunnenberg HG
Citation(s) 21187892
Submission date Aug 30, 2010
Last update date May 15, 2019
Contact name H.G. Stunnenberg
E-mail(s) h.stunnenberg@ncmls.ru.nl
Phone +31-24-3610520
Organization name Radboud University
Department Department of Molecular Biology (274)
Street address Geert Grooteplein 28
City Nijmegen
ZIP/Postal code 6525 GA
Country USA
 
Platforms (1)
GPL10866 Illumina Genome Analyzer II (Plasmodium falciparum 3D7)
Samples (17)
GSM588510 P.falciparum_3D7_ChIPseq_H2A.Z_10hpi
GSM588511 P.falciparum_3D7_ChIPseq_H2A.Z_20hpi
GSM588512 P.falciparum_3D7_ChIPseq_H2A.Z_30hpi
This SubSeries is part of SuperSeries:
GSE23787 H2A.Z Demarcates Intergenic Regions of the Plasmodium falciparum Epigenome That Are Dynamically Marked by H3K9ac and H3K4me3
Relations
SRA SRP003508
BioProject PRJNA133173

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE23867_RAW.tar 735.1 Mb (http)(custom) TAR (of BED, GFF)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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