|
| Status |
Public on Oct 28, 2010 |
| Title |
Epigenetic profile of the Plasmodium falciparum intraerythrocytic cycle |
| Organism |
Plasmodium falciparum 3D7 |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This experiment characterizes the localisation of H2A.Z, H3K9ac and H3K4me3 in the epigenome of the human malaria parasite, P. falciparum at 4 different stages of intraerythrocytic development.
|
| |
|
| Overall design |
Examination of H2A.Z, H3K9ac, H3K4me3 and mono-nucleosomal input in 3D7 strain at 4 different stages and H2A in 3D7 strain at 1 stage using native ChIP-seq
|
| |
|
| Contributor(s) |
Bartfai R, Hoeijmakers WA, Salcedo-Amaya AM, Smits AH, Janssen-Megens E, Kaan A, Treeck M, Gilberger T, Françoijs K, Stunnenberg HG |
| Citation(s) |
21187892 |
| |
| Submission date |
Aug 30, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
H.G. Stunnenberg |
| E-mail(s) |
h.stunnenberg@ncmls.ru.nl
|
| Phone |
+31-24-3610520
|
| Organization name |
Radboud University
|
| Department |
Department of Molecular Biology (274)
|
| Street address |
Geert Grooteplein 28
|
| City |
Nijmegen |
| ZIP/Postal code |
6525 GA |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL10866 |
Illumina Genome Analyzer II (Plasmodium falciparum 3D7) |
|
| Samples (17)
|
| GSM588510 |
P.falciparum_3D7_ChIPseq_H2A.Z_10hpi |
| GSM588511 |
P.falciparum_3D7_ChIPseq_H2A.Z_20hpi |
| GSM588512 |
P.falciparum_3D7_ChIPseq_H2A.Z_30hpi |
| GSM588513 |
P.falciparum_3D7_ChIPseq_H2A.Z_40hpi |
| GSM588514 |
P.falciparum_3D7_ChIPseq_H2A_40hpi |
| GSM588515 |
P.falciparum_3D7_ChIPseq_H3K9ac_10hpi |
| GSM588516 |
P.falciparum_3D7_ChIPseq_H3K9ac_20hpi |
| GSM588517 |
P.falciparum_3D7_ChIPseq_H3K9ac_30hpi |
| GSM588518 |
P.falciparum_3D7_ChIPseq_H3K9ac_40hpi |
| GSM588519 |
P.falciparum_3D7_ChIPseq_H3K4me3_10hpi |
| GSM588520 |
P.falciparum_3D7_ChIPseq_H3K4me3_20hpi |
| GSM588521 |
P.falciparum_3D7_ChIPseq_H3K4me3_30hpi |
| GSM588522 |
P.falciparum_3D7_ChIPseq_H3K4me3_40hpi |
| GSM588523 |
P.falciparum_3D7_ChIPseq_input_10hpi |
| GSM588524 |
P.falciparum_3D7_ChIPseq_input_20hpi |
| GSM588525 |
P.falciparum_3D7_ChIPseq_input_30hpi |
| GSM588526 |
P.falciparum_3D7_ChIPseq_input_40hpi |
|
| This SubSeries is part of SuperSeries: |
| GSE23787 |
H2A.Z Demarcates Intergenic Regions of the Plasmodium falciparum Epigenome That Are Dynamically Marked by H3K9ac and H3K4me3 |
|
| Relations |
| SRA |
SRP003508 |
| BioProject |
PRJNA133173 |
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