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| Status |
Public on Jan 11, 2024 |
| Title |
Transcription factor dynamics, oscillation, and functions in human enteroendocrine cell differentiation [scRNA-seq] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate the regulation of human enteroendocrine cell differentiation, we established Neurog3ER inducible cell lines.
We then performed gene expression profiling analysis at single cell level using data obtained from single cell RNA-seq of at various time points.
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| Overall design |
single cell RNA-seq of at various time points
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| Web link |
https://www.cell.com/cell-stem-cell/abstract/S1934-5909(24)00142-5?rss=yes
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| Contributor(s) |
Singh PN, Shivdasani RA |
| Citation(s) |
38733993 |
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| Submission date |
Jul 26, 2023 |
| Last update date |
Aug 15, 2024 |
| Contact name |
Ramesh A Shivdasani |
| E-mail(s) |
ramesh_shivdasani@dfci.harvard.edu
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| Phone |
(617) 632-5746
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| Organization name |
DFCI
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| Department |
Medical Oncology
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| Lab |
Shivdasani lab
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| Street address |
SM1052, Smith10, 450 Brookline Ave
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| City |
Brookline |
| State/province |
Massachusetts |
| ZIP/Postal code |
02445 |
| Country |
USA |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (6)
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| GSM7661368 |
Line#2, D5, tam-inducible, scRNAseq |
| GSM7661369 |
Line#2, D6, tam-inducible, scRNAseq, rep1 |
| GSM7661370 |
Line#2, D6, tam-inducible, scRNAseq, rep2 |
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| This SubSeries is part of SuperSeries: |
| GSE238276 |
Transcription factor dynamics, oscillation, and functions in human enteroendocrine cell differentiation |
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| Relations |
| BioProject |
PRJNA998714 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE238274_RAW.tar |
193.1 Mb |
(http)(custom) |
TAR (of MTX, TSV) |
| GSE238274_scRNA_celltype_annotation.txt.gz |
73.0 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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