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GEO accession:
Series GSE238228
Query DataSets for GSE238228
Status
Public on Mar 17, 2024
Title
Combinational effect of the ADD domains of DNMT3A and DNMT3L on DNA methylation landscapes in mouse germ cells
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://www.nature.com/articles/s41467-024-47699-2
Citation(s)
38627502
Submission date
Jul 25, 2023
Last update date
May 01, 2024
Contact name
Naoki Kubo
E-mail(s)
naoki.kubo@bioreg.kyushu-u.ac.jp
Organization name
Kyushu University
Street address
3-1-1 Maidashi, Higashi-ku
City
Fukuoka
State/province
Fukuoka
ZIP/Postal code
812-8582
Country
Japan
Platforms (1)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (68)
Less...
More...
GSM7660736
RNA_WT_FGO_Rep1
GSM7660737
RNA_WT_FGO_Rep2
GSM7660738
RNA_WT_FGO_Rep3
GSM7660739
RNA_WT_FGO_Rep4
GSM7660740
RNA_WT_FGO_Rep5
GSM7660741
RNA_WT_FGO_Rep6
GSM7660742
RNA_WT_FGO_Rep7
GSM7660743
RNA_WT_FGO_Rep8
GSM7660744
RNA_WT_FGO_Rep9
GSM7660745
RNA_WT_FGO_Rep10
GSM7660746
RNA_WT_FGO_Rep11
GSM7660747
RNA_WT_FGO_Rep12
GSM7660748
RNA_WT_FGO_Rep13
GSM7660749
RNA_WT_FGO_Rep14
GSM7660750
RNA_WT_FGO_Rep15
GSM7660751
RNA_WT_FGO_Rep16
GSM7660752
RNA_WT_FGO_Rep17
GSM7660753
RNA_WT_FGO_Rep18
GSM7660754
RNA_DNMT3L-ADD_FGO_Rep1
GSM7660755
RNA_DNMT3L-ADD_FGO_Rep2
GSM7660756
RNA_DNMT3L-ADD_FGO_Rep3
GSM7660757
RNA_DNMT3L-ADD_FGO_Rep4
GSM7660758
RNA_DNMT3L-ADD_FGO_Rep5
GSM7660759
RNA_DNMT3L-ADD_FGO_Rep6
GSM7660760
RNA_DNMT3L-ADD_FGO_Rep7
GSM7660761
RNA_DNMT3L-ADD_FGO_Rep8
GSM7660762
RNA_DNMT3A-ADD_FGO_Rep1
GSM7660763
RNA_DNMT3A-ADD_FGO_Rep2
GSM7660764
RNA_DNMT3A-ADD_FGO_Rep3
GSM7660765
RNA_DNMT3A-ADD_FGO_Rep4
GSM7660766
RNA_DNMT3A-ADD_FGO_Rep5
GSM7660767
RNA_DNMT3A-ADD_FGO_Rep6
GSM7660768
RNA_DNMT3A-ADD_FGO_Rep7
GSM7660769
RNA_DNMT3A-ADD_FGO_Rep8
GSM7660770
RNA_DNMT3A+DNMT3L-ADD_FGO_Rep1
GSM7660771
RNA_DNMT3A+DNMT3L-ADD_FGO_Rep2
GSM7660772
RNA_DNMT3A+DNMT3L-ADD_FGO_Rep3
GSM7660773
RNA_DNMT3A+DNMT3L-ADD_FGO_Rep4
GSM7660774
RNA_DNMT3A+DNMT3L-ADD_FGO_Rep5
GSM7660775
RNA_DNMT3A+DNMT3L-ADD_FGO_Rep6
GSM7660776
RNA_DNMT3A+DNMT3L-ADD_FGO_Rep7
GSM7660777
RNA_DNMT3A+DNMT3L-ADD_FGO_Rep8
GSM7660778
RNA_WT_MII_Rep1
GSM7660779
RNA_WT_MII_Rep2
GSM7660780
RNA_WT_MII_Rep3
GSM7660781
RNA_WT_MII_Rep4
GSM7660782
RNA_WT_MII_Rep5
GSM7660783
RNA_WT_MII_Rep6
GSM7660784
RNA_WT_MII_Rep7
GSM7660785
RNA_WT_MII_Rep8
GSM7660786
RNA_WT_MII_Rep9
GSM7660787
RNA_WT_MII_Rep10
GSM7660788
RNA_DNMT3A+DNMT3L-ADD_E9_embryo_Rep1
GSM7660789
RNA_DNMT3A+DNMT3L-ADD_E9_embryo_Rep2
GSM7660790
RNA_DNMT3A+DNMT3L-ADD_E9_embryo_Rep3
GSM7660791
WGBS_WT_FGO_Rep1
GSM7660792
WGBS_WT_FGO_Rep2
GSM7660793
WGBS_DNMT3L-ADD_FGO_Rep1
GSM7660794
WGBS_DNMT3L-ADD_FGO_Rep2
GSM7660795
WGBS_DNMT3A+DNMT3L-ADD_FGO_Rep1
GSM7660796
WGBS_DNMT3A+DNMT3L-ADD_FGO_Rep2
GSM7660797
WGBS_WT_Sperm_Rep1
GSM7660798
WGBS_DNMT3L-ADD_Sperm_Rep1
GSM7660799
WGBS_DNMT3L-ADD_Sperm_Rep2
GSM7660800
WGBS_DNMT3A-ADD_Sperm_Rep1
GSM7660801
WGBS_DNMT3A-ADD_Sperm_Rep2
GSM7660802
WGBS_DNMT3A+DNMT3L-ADD_Sperm_Rep1
GSM8008700
WGBS_DNMT3A+DNMT3L-ADD_Sperm_Rep2
This SuperSeries is composed of the following SubSeries:
GSE238226
Combinational effect of the ADD domains of DNMT3A and DNMT3L on DNA methylation landscapes in mouse germ cells [RNA-seq]
GSE238227
Combinational effect of the ADD domains of DNMT3A and DNMT3L on DNA methylation landscapes in mouse germ cells [WGBS]
Relations
BioProject
PRJNA998390
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE238228_RAW.tar
212.9 Mb
(http)
(custom)
TAR (of BEDGRAPH, TXT)
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