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Status |
Public on Jul 25, 2023 |
Title |
Flexible and scalable control of T cell memory by a reversible epigenetic switch |
Organism |
Mus musculus |
Experiment type |
Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation missing |
Has this study been published? Please login to update or notify GEO. |
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Submission date |
Jul 20, 2023 |
Last update date |
Jul 25, 2023 |
Contact name |
Kathleen Abadie |
E-mail(s) |
abadiek@uw.edu
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Organization name |
University of Washington
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Department |
Bioengineering
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Lab |
Kueh Lab
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Street address |
3720 15th Ave NE
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City |
Seattle |
State/province |
Washington |
ZIP/Postal code |
98195 |
Country |
USA |
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Platforms (2) |
GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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Samples (24)
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GSM7655043 |
Day9 Tcf7-YFP high, sorted Tcf7-YFP high at Day3, 1 (ATAC-seq) |
GSM7655044 |
Day9 Tcf7-YFP high, sorted Tcf7-YFP high at Day3, 2 (ATAC-seq) |
GSM7655045 |
Day9 Tcf7-YFP low, sorted Tcf7-YFP low at Day3, 1 (ATAC-seq) |
GSM7655046 |
Day9 Tcf7-YFP low, sorted Tcf7-YFP low at Day3, 2 (ATAC-seq) |
GSM7655047 |
Day9 Tcf7-YFP low, sorted Tcf7-YFP low at Day3, 3 (ATAC-seq) |
GSM7655048 |
Day9 Tcf7-YFP high, sorted Tcf7-YFP low at Day3, 1 (ATAC-seq) |
GSM7655049 |
Day9 Tcf7-YFP high, sorted Tcf7-YFP low at Day3, 2 (ATAC-seq) |
GSM7655050 |
Day9 Tcf7-YFP high, sorted Tcf7-YFP low at Day3, 3 (ATAC-seq) |
GSM7655051 |
Day3 effector, 1 (RNA-seq) |
GSM7655052 |
Day9 Tcf7-YFP high, sorted Tcf7-YFP high at Day3, 1 (RNA-seq) |
GSM7655053 |
Day9 Tcf7-YFP high, sorted Tcf7-YFP low at Day3, 1 (RNA-seq) |
GSM7655054 |
Day9 Tcf7-YFP low, sorted Tcf7-YFP low at Day3, 1 (RNA-seq) |
GSM7655055 |
Day3 effector, 2 (RNA-seq) |
GSM7655056 |
Day9 Tcf7-YFP high, sorted Tcf7-YFP high at Day3, 2 (RNA-seq) |
GSM7655057 |
Day9 Tcf7-YFP high, sorted Tcf7-YFP low at Day3, 2 (RNA-seq) |
GSM7655058 |
Day9 Tcf7-YFP low, sorted Tcf7-YFP low at Day3, 2 (RNA-seq) |
GSM7655059 |
Splenocyte antigen-experienced, 1 (RNA-seq) |
GSM7655060 |
Splenocyte naïve, 1 (RNA-seq) |
GSM7655061 |
Splenocyte antigen-experienced, 2 (RNA-seq) |
GSM7655062 |
Splenocyte naïve, 2 (RNA-seq) |
GSM7655063 |
T cell sci-fate |
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This SuperSeries is composed of the following SubSeries: |
GSE237827 |
Flexible and scalable control of T cell memory by a reversible epigenetic switch (ATAC-seq) |
GSE237828 |
Flexible and scalable control of T cell memory by a reversible epigenetic switch (RNA-seq) |
GSE237829 |
Flexible and scalable control of T cell memory by a reversible epigenetic switch (sci-fate-seq) |
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Relations |
BioProject |
PRJNA996890 |
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