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| Status |
Public on Jan 29, 2024 |
| Title |
Near-cognate tRNAs increase the efficiency and precision of pseudouridine-mediated readthrough of premature termination codons |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Other
Non-coding RNA profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://www.nature.com/articles/s41587-024-02165-8
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| Citation(s) |
38448662 |
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| Submission date |
Jul 18, 2023 |
| Last update date |
Apr 30, 2024 |
| Contact name |
Wenqing Liu |
| E-mail(s) |
puyulwq@163.com, liuwq21@gamils.com
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| Organization name |
Peking University
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| Street address |
No. 5 Summer Palace Road, Haidian District, Beijing
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| City |
Beijing |
| ZIP/Postal code |
100871 |
| Country |
China |
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| Platforms (3) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
| GPL30209 |
MGISEQ-2000RS (Homo sapiens) |
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| Samples (70)
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| GSM7634959 |
HEK293T,RESTART v2-target TGA,rep 2 |
| GSM7634960 |
HEK293T,RESTART v3-target TGA,rep 1 |
| GSM7634961 |
HEK293T,RESTART v3-target TGA,rep 2 |
| GSM7634962 |
HEK293T,RESTART v1-target TAG,rep 1 |
| GSM7634963 |
HEK293T,RESTART v1-target TAG,rep 2 |
| GSM7634964 |
HEK293T,RESTART v2-target TAG,rep 1 |
| GSM7634965 |
HEK293T,RESTART v2-target TAG,rep 2 |
| GSM7634966 |
HEK293T,RESTART v3-target TAG,rep 1 |
| GSM7634967 |
HEK293T,RESTART v3-target TAG,rep 2 |
| GSM7634968 |
HEK293T,RESTART v1-target TAA,rep 1 |
| GSM7634969 |
HEK293T,RESTART v1-target TAA,rep 2 |
| GSM7634970 |
HEK293T,RESTART v2-target TAA,rep 1 |
| GSM7634971 |
HEK293T,RESTART v2-target TAA,rep 2 |
| GSM7634972 |
HEK293T,RESTART v3-target TAA,rep 1 |
| GSM7634973 |
HEK293T,RESTART v3-target TAA,rep 2 |
| GSM7634974 |
HEK293T,18S,rep1 |
| GSM7634975 |
HEK293T,gctrl-TAA-tRNA,rep 1 |
| GSM7634976 |
HEK293T,gctrl-TAA-tRNA,rep 2 |
| GSM7634977 |
HEK293T,RESTART v3-TAA-tRNA,rep 1 |
| GSM7634978 |
HEK293T,RESTART v3-TAA-tRNA,rep 2 |
| GSM7634979 |
HEK293T,gctrl-TAG-tRNA,rep 1 |
| GSM7634980 |
HEK293T,gctrl-TAG-tRNA,rep 2 |
| GSM7634981 |
HEK293T,RESTART v3-TAG-tRNA,rep 1 |
| GSM7634982 |
HEK293T,RESTART v3-TAG-tRNA,rep 2 |
| GSM7634983 |
HEK293T,gctrl-TGA-tRNA,rep 1 |
| GSM7634984 |
HEK293T,gctrl-TGA-tRNA,rep 2 |
| GSM7634985 |
HEK293T,RESTART v3-TGA-tRNA,rep 1 |
| GSM7634986 |
HEK293T,RESTART v3-TGA-tRNA,rep 2 |
| GSM7634987 |
HEK293T,gctrl-TAA-RNA,rep 1 |
| GSM7634988 |
HEK293T,gctrl-TAA-RNA,rep 2 |
| GSM7634989 |
HEK293T,RESTART v3-TAA-RNA,rep 1 |
| GSM7634990 |
HEK293T,RESTART v3-TAA-RNA,rep 2 |
| GSM7634991 |
HEK293T,gctrl-TAG-RNA,rep 1 |
| GSM7634992 |
HEK293T,gctrl-TAG-RNA,rep 2 |
| GSM7634993 |
HEK293T,RESTART v3-TAG-RNA,rep 1 |
| GSM7634994 |
HEK293T,RESTART v3-TAG-RNA,rep 2 |
| GSM7634995 |
HEK293T,gctrl-TGA-RNA,rep 1 |
| GSM7634996 |
HEK293T,gctrl-TGA-RNA,rep 2 |
| GSM7634997 |
HEK293T,RESTART v3-TGA-RNA,rep 1 |
| GSM7634998 |
HEK293T,RESTART v3-TGA-RNA,rep 2 |
| GSM7634999 |
HEK293T,mock-PRAISE,rep 1 |
| GSM7635000 |
HEK293T,gctrl-PRAISE,rep 1 |
| GSM7635001 |
HEK293T,gctrl-PRAISE,rep 2 |
| GSM7635002 |
HEK293T,RESTART v3-PRAISE,rep 1 |
| GSM7635003 |
HEK293T,RESTART v3-PRAISE,rep 2 |
| GSM7962130 |
16HBE, 18S, rep 1 |
| GSM7962131 |
16HBE, 18S, rep 2 |
| GSM7962132 |
16HBE, RESTART v3-treated, rep 1 |
| GSM7962133 |
16HBE, RESTART v3-treated, rep 2 |
| GSM7962134 |
16HBE, untreated, rep 1 |
| GSM7962135 |
MEF, RESTART v3-treated, rep 1 |
| GSM7962136 |
MEF, RESTART v3-treated, rep 2 |
| GSM7962137 |
MEF, untreated, rep 1 |
| GSM7962156 |
HEK293T, tRNA-R-TCG-1 overexpressed, rep 1 |
| GSM7962157 |
HEK293T, tRNA-R-TCG-1 overexpressed, rep 2 |
| GSM7962158 |
HEK293T, tRNA-R-TCG-4 overexpressed, rep 1 |
| GSM7962159 |
HEK293T, tRNA-R-TCG-4 overexpressed, rep 2 |
| GSM7962160 |
HEK293T, tRNA-R-TCT-1 overexpressed, rep 1 |
| GSM7962161 |
HEK293T, tRNA-R-TCT-1 overexpressed, rep 2 |
| GSM7962162 |
HEK293T, tRNA-R-TCT-4 overexpressed, rep 1 |
| GSM7962163 |
HEK293T, tRNA-R-TCT-4 overexpressed, rep 2 |
| GSM7962164 |
HEK293T, tRNA-W-CCA-2 overexpressed, rep 1 |
| GSM7962165 |
HEK293T, tRNA-W-CCA-2 overexpressed, rep 2 |
| GSM7962166 |
HEK293T, tRNA-W-CCA-4 overexpressed, rep 1 |
| GSM7962167 |
HEK293T, tRNA-W-CCA-4 overexpressed, rep 2 |
| GSM7962168 |
HEK293T, untreated, rep 1 |
| GSM7962169 |
HEK293T, untreated, rep 2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE237629 |
Near-cognate tRNAs increase the efficiency and precision of pseudouridine-mediated readthrough of premature termination codons [Target-seq] |
| GSE237630 |
Near-cognate tRNAs increase the efficiency and precision of pseudouridine-mediated readthrough of premature termination codons [tRNA-seq] |
| GSE237631 |
Near-cognate tRNAs increase the efficiency and precision of pseudouridine-mediated readthrough of premature termination codons [RNA-seq] |
| GSE237632 |
Near-cognate tRNAs increase the efficiency and precision of pseudouridine-mediated readthrough of premature termination codons [PRAISE] |
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| Relations |
| BioProject |
PRJNA996057 |
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