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Series GSE235896 Query DataSets for GSE235896
Status Public on Jul 11, 2023
Title Decoder-seq enhances mRNA capture efficiency in spatial RNA sequencing
Organisms Homo sapiens; Mus musculus
Experiment type Other
Expression profiling by high throughput sequencing
Summary Here, we report a dendrimeric DNA coordinate barcoding design for spatial RNA sequencing (Decoder-seq) offering both high sensitivity and high resolution.
Overall design Decoder-seq offers exceptional flexibility and precision in spatial resolution with spot widths of 50, 25, and 15 μm and various capture areas of spatially barcoded arrays. It was employed to mouse hippocampus, olfactory bulb and hemibrain, and human renal cancers.

Please note that [1] the records have been updated with additional HE image files and coordinate file information on Nov 16, 2023 [2] the processed data for GSM7585162 has been updated on Dec 8, 2023.
Contributor(s) Cao J, Sun D
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jun 27, 2023
Last update date Dec 08, 2023
Contact name di sun
Organization name Renji Hospital, School of Medicine, Shanghai Jiao Tong University
Department institute of molecular medicine
Street address pujian road 160
City shanghai
ZIP/Postal code 200120
Country China
Platforms (2)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (23)
GSM7585149 clear cell RCC, patient 1, leading-edge [ccRCC-1-L]
GSM7585150 clear cell RCC, patient 1, tumor core [ccRCC-1-T]
GSM7585151 chromophobe RCC, patient 1, leading-edge [chRCC-1-L]
BioProject PRJNA993105

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE235896_RAW.tar 1.9 Gb (http)(custom) TAR (of CSV, H5, JPG, PNG, TAR, TIFF, TXT)
GSE235896_barcode.txt.gz 14.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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