|
| Status |
Public on May 29, 2012 |
| Title |
Small RNA profiling Tomato, wild tomato relative and series of introgression lines |
| Organisms |
Solanum lycopersicum; Solanum pennellii; Solanum lycopersicum x Solanum pennellii |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
High throughput sequencing was used to investigate the production of small RNAs from cultivated tomato cultivar M82 and its wild relative Solanum pennellii. In order to understand the pattern of inheritance of the samll RNAs, interspecific hybrids (F1 and F2) along with series of introgressed lines comprising precise short genomic regions from S. pennellii in M82 background were used.
|
| |
|
| Overall design |
Examination of small RNA production in several tomato lines.
|
| |
|
| Contributor(s) |
Dunn R, Shivaprasad P |
| Citation(s) |
22408077, 22179699 |
| Submission date |
Aug 11, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Krys Kelly |
| Organization name |
University of Cambridge
|
| Department |
Plant Sciences
|
| Lab |
Baulcombe Group
|
| Street address |
Downing Street
|
| City |
Cambridge |
| ZIP/Postal code |
CB2 3EA |
| Country |
United Kingdom |
| |
|
| Platforms (3) |
| GPL9245 |
Illumina Genome Analyzer (Solanum lycopersicum) |
| GPL10776 |
Illumina Genome Analyzer (Solanum pennellii) |
| GPL10777 |
Illumina Genome Analyzer (Solanum lycopersicum x Solanum pennellii) |
|
| Samples (18)
|
|
| Relations |
| SRA |
SRP003466 |
| BioProject |
PRJNA131793 |
Less...
More...