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Series GSE234620 Query DataSets for GSE234620
Status Public on Jun 14, 2023
Title A contamination focused approach for optimizing the single-cell RNA-seq experiment
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary created metrics to measure quality of scRNA seq datasets
 
Overall design compared contamination QC metrics and standard QC metrics on multiple experimental conditions
 
Contributor(s) Lau K, Simmons A, Arceneaux D
Citation(s) 37496679
Submission date Jun 09, 2023
Last update date Aug 21, 2023
Contact name Ken Lau
E-mail(s) ken.s.lau@vanderbilt.edu
Phone 6159366859
Organization name Vanderbilt University
Department Cell and Developmental Biology
Street address 2215 Garland Ave. MRBIV10475
City Nashville
State/province TN
ZIP/Postal code 37232
Country USA
 
Platforms (3)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (28)
GSM7471989 4498-AS-1: Colagenase + DNaseS1 F1
GSM7471990 4498-AS-2: Cold Protease S2 F1 (CP on crypts)
GSM7471991 4498-AS-3: MACS (minced) S1 F1
Relations
BioProject PRJNA982142

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE234620_RAW.tar 1.1 Gb (http)(custom) TAR (of H5AD)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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