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| Status |
Public on May 24, 2023 |
| Title |
Molecular features driving condensate formation and gene expression by the BRD4-NUT fusion oncoprotein are overlapping but distinct |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
37488172 |
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| Submission date |
May 24, 2023 |
| Last update date |
Aug 23, 2023 |
| Contact name |
Michael K Rosen |
| E-mail(s) |
michael.rosen@utsouthwestern.edu
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| Organization name |
UT Southwestern Medical Center
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| Department |
Biophysics
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| Lab |
Michael Rosen Laboratory
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| Street address |
6001 Forest Park Rd., ND8.124
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| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75235 |
| Country |
USA |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (28)
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| GSM7421832 |
HEK293 T-Rex Flp-In cells, BRD4-NUT, input |
| GSM7421833 |
HEK293 T-Rex Flp-In cells, BRD4-NUT, NUT antibody, biol rep 1 |
| GSM7421834 |
HEK293 T-Rex Flp-In cells, BRD4-NUT, NUT antibody, biol rep 2 |
| GSM7421835 |
HEK293 T-Rex Flp-In cells, BRD4-NUT(MIN), input 1 |
| GSM7421836 |
HEK293 T-Rex Flp-In cells, BRD4-NUT(MIN), input 2 |
| GSM7421837 |
HEK293 T-Rex Flp-In cells, BRD4-NUT(MIN), NUT antibody, biol rep 1 |
| GSM7421838 |
HEK293 T-Rex Flp-In cells, BRD4-NUT(MIN), NUT antibody, biol rep 2 |
| GSM7421839 |
HEK293 T-Rex Flp-In cells, BRD4-NUT(MIN), H3K27Ac antibody, biol rep 1 |
| GSM7421840 |
HEK293 T-Rex Flp-In cells, BRD4-NUT(MIN), H3K27Ac antibody, biol rep 2 |
| GSM7421841 |
HEK293 T-Rex Flp-In cells, BRD4-p300, input |
| GSM7421842 |
HEK293 T-Rex Flp-In cells, BRD4-p300, H3K27Ac antibody, biol rep 1 |
| GSM7421843 |
HEK293 T-Rex Flp-In cells, BRD4-p300, H3K27Ac antibody, biol rep 2 |
| GSM7421844 |
HEK293 T-Rex Flp-In cells, input |
| GSM7421845 |
HEK293 T-Rex Flp-In cells, H3K27Ac antibody |
| GSM7421846 |
HEK293 T-Rex Flp-In cells, control, biol rep 1 |
| GSM7421847 |
HEK293 T-Rex Flp-In cells, control, biol rep 2 |
| GSM7421848 |
HEK293 T-Rex Flp-In cells, BRD4-NUT, biol rep 1 |
| GSM7421849 |
HEK293 T-Rex Flp-In cells, BRD4-NUT, biol rep 2 |
| GSM7421850 |
HEK293 T-Rex Flp-In cells, BRD4-NUT(MIN), biol rep 1 |
| GSM7421851 |
HEK293 T-Rex Flp-In cells, BRD4-NUT(MIN), biol rep 2 |
| GSM7421852 |
HEK293 T-Rex Flp-In cells, BRD4-p300, biol rep 1 |
| GSM7421853 |
HEK293 T-Rex Flp-In cells, BRD4-p300, biol rep 2 |
| GSM7421854 |
HEK293 T-Rex Flp-In cells, BRD4-p300(H*IT), biol rep 1 |
| GSM7421855 |
HEK293 T-Rex Flp-In cells, BRD4-p300(H*IT), biol rep 2 |
| GSM7421856 |
HEK293 T-Rex Flp-In cells, BRD4-p300(HI), biol rep 1 |
| GSM7421857 |
HEK293 T-Rex Flp-In cells, BRD4-p300(HI), biol rep 2 |
| GSM7421858 |
HEK293 T-Rex Flp-In cells, BRD4-p300(I), biol rep 1 |
| GSM7421859 |
HEK293 T-Rex Flp-In cells, BRD4-p300(I), biol rep 2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE233301 |
Molecular features driving condensate formation and gene expression by the BRD4-NUT fusion oncoprotein are overlapping but distinct [ChIP-seq] |
| GSE233302 |
Molecular features driving condensate formation and gene expression by the BRD4-NUT fusion oncoprotein are overlapping but distinct [RNA-seq] |
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| Relations |
| BioProject |
PRJNA975829 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE233303_RAW.tar |
50.6 Mb |
(http)(custom) |
TAR (of BROADPEAK, GAPPEDPEAK, NARROWPEAK) |
SRA Run Selector |
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