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Series GSE233216 Query DataSets for GSE233216
Status Public on Sep 27, 2023
Title Glycolytic shift during West Nile virus infection provides new therapeutic opportunities [Brain]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To investigate the in vivo metabolic changes during WNV infection in a mouse model, we infected mice with WNV NY99 to compare to uninfected (mock) mice. We also use two compounds targeting energetic metabolism to analysed their effects on WNV infection
We then performed gene expression profiling analysis using data obtained from RNA-seq from infected vs uninfected mice and treated mice.
 
Overall design Comparative gene expression profiling analysis of brain RNA-seq data for mice infected with WNV vs uninfected mice
 
Contributor(s) Mingo-Casas P, Blázquez A, Saiz J, Martín-Acebes MA
Citation(s) 37759218
Submission date May 23, 2023
Last update date Dec 28, 2023
Contact name Miguel A. Martín-Acebes
E-mail(s) martin.mangel@inia.csic.es
Organization name INIA-CSIC
Street address Ctra. de La Coruña, km 7, 5
City Madrid
State/province Madrid
ZIP/Postal code 28040
Country Spain
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (36)
GSM7413044 Brain, Mock, 3 dpi, m1
GSM7413045 Brain, Mock, 3 dpi, m3
GSM7413046 Brain, Mock, 3 dpi, m6
This SubSeries is part of SuperSeries:
GSE233218 Glycolytic shift during West Nile virus infection provides new therapeutic opportunities
Relations
BioProject PRJNA975481

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE233216_processed_data_brain.xlsx 26.4 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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