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GEO help: Mouse over screen elements for information. |
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Status |
Public on Sep 27, 2023 |
Title |
Glycolytic shift during West Nile virus infection provides new therapeutic opportunities [Brain] |
Organism |
Mus musculus |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
To investigate the in vivo metabolic changes during WNV infection in a mouse model, we infected mice with WNV NY99 to compare to uninfected (mock) mice. We also use two compounds targeting energetic metabolism to analysed their effects on WNV infection We then performed gene expression profiling analysis using data obtained from RNA-seq from infected vs uninfected mice and treated mice.
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Overall design |
Comparative gene expression profiling analysis of brain RNA-seq data for mice infected with WNV vs uninfected mice
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Contributor(s) |
Mingo-Casas P, Blázquez A, Saiz J, Martín-Acebes MA |
Citation(s) |
37759218 |
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Submission date |
May 23, 2023 |
Last update date |
Dec 28, 2023 |
Contact name |
Miguel A. Martín-Acebes |
E-mail(s) |
martin.mangel@inia.csic.es
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Organization name |
INIA-CSIC
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Street address |
Ctra. de La Coruña, km 7, 5
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City |
Madrid |
State/province |
Madrid |
ZIP/Postal code |
28040 |
Country |
Spain |
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Platforms (1) |
GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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Samples (36)
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GSM7413047 |
Brain, Mock, 3 dpi, m7 |
GSM7413048 |
Brain, Mock, 3 dpi, m8 |
GSM7413049 |
Brain, Mock, 3 dpi, m9 |
GSM7413050 |
Brain, WNV, 3 dpi, m1 |
GSM7413051 |
Brain, WNV, 3 dpi, m2 |
GSM7413052 |
Brain, WNV, 3 dpi, m4 |
GSM7413053 |
Brain, WNV, 3 dpi, m6 |
GSM7413054 |
Brain, WNV, 3 dpi, m8 |
GSM7413055 |
Brain, WNV, 3 dpi, m9 |
GSM7413056 |
Brain, Mock, 7 dpi, m3 |
GSM7413057 |
Brain, Mock, 7 dpi, m5 |
GSM7413058 |
Brain, Mock, 7 dpi, m6 |
GSM7413059 |
Brain, Mock, 7 dpi, m8 |
GSM7413060 |
Brain, Mock, 7 dpi, m9 |
GSM7413061 |
Brain, Mock, 7 dpi, m10 |
GSM7413062 |
Brain, WNV, 7 dpi, m2 |
GSM7413063 |
Brain, WNV, 7 dpi, m4 |
GSM7413064 |
Brain, WNV, 7 dpi, m5 |
GSM7413065 |
Brain, WNV, 7 dpi, m6 |
GSM7413066 |
Brain, WNV, 7 dpi, m8 |
GSM7413067 |
Brain, WNV, 7 dpi, m9 |
GSM7413068 |
Brain, Mock, 10 dpi, m1 |
GSM7413069 |
Brain, Mock, 10 dpi, m2 |
GSM7413070 |
Brain, Mock, 10 dpi, m4 |
GSM7413071 |
Brain, Mock, 10 dpi, m5 |
GSM7413072 |
Brain, Mock, 10 dpi, m6 |
GSM7413073 |
Brain, Mock, 10 dpi, m7 |
GSM7413074 |
Brain, WNV, 10 dpi, m1 |
GSM7413075 |
Brain, WNV, 10 dpi, m2 |
GSM7413076 |
Brain, WNV, 10 dpi, m3 |
GSM7413077 |
Brain, WNV, 10 dpi, m4 |
GSM7413078 |
Brain, WNV, 10 dpi, m5 |
GSM7413079 |
Brain, WNV, 10 dpi, m8 |
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This SubSeries is part of SuperSeries: |
GSE233218 |
Glycolytic shift during West Nile virus infection provides new therapeutic opportunities |
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Relations |
BioProject |
PRJNA975481 |
Supplementary file |
Size |
Download |
File type/resource |
GSE233216_processed_data_brain.xlsx |
26.4 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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