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Series GSE232941 Query DataSets for GSE232941
Status Public on May 08, 2024
Title Mucosal immune response against equine herpesvirus type 1
Organism Equus caballus
Experiment type Expression profiling by high throughput sequencing
Summary To investigate pre-existing mucosal immunity in equine herpesvirus type 1 (EHV-1) immune and non-immune horses during experimental viral challenge.
RNAseq was performed on nasal mucosal swab samples from immune and non-immune horses from pre (d-2), early (d1pi and d3pi), mid (d8pi and d10pi), and late (d18pi) infection.
 
Overall design Comparative gene expression analysis of immune and non-immune horses throughout viral challenge.
 
Contributor(s) Holmes CM, Babasyan S, Eady N, Schnabel CL, Wagner B
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Submission date May 19, 2023
Last update date May 08, 2024
Contact name Bettina Wagner
E-mail(s) bw73@cornell.edu
Organization name Cornell University
Department Population Medicine and Diagnostic Sciences
Lab Wagner
Street address 240 Farrier Drive
City Ithaca
State/province NY
ZIP/Postal code 14815
Country USA
 
Platforms (1)
GPL21401 Illumina NextSeq 500 (Equus caballus)
Samples (48)
GSM7395722 Horse 5, non-immune, d-2
GSM7395723 Horse 6, immune, d-2
GSM7395724 Horse 11, immune, d-2
Relations
BioProject PRJNA974455

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE232941_EHV-1_rawCounts.txt.gz 1.3 Kb (ftp)(http) TXT
GSE232941_equine_rawCounts.txt.gz 1.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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