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Series GSE232941 Query DataSets for GSE232941
Status Public on May 08, 2024
Title Mucosal immune response against equine herpesvirus type 1
Organism Equus caballus
Experiment type Expression profiling by high throughput sequencing
Summary To investigate pre-existing mucosal immunity in equine herpesvirus type 1 (EHV-1) immune and non-immune horses during experimental viral challenge.
RNAseq was performed on nasal mucosal swab samples from immune and non-immune horses from pre (d-2), early (d1pi and d3pi), mid (d8pi and d10pi), and late (d18pi) infection.
Overall design Comparative gene expression analysis of immune and non-immune horses throughout viral challenge.
Contributor(s) Holmes CM, Babasyan S, Eady N, Schnabel CL, Wagner B
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Submission date May 19, 2023
Last update date May 08, 2024
Contact name Bettina Wagner
Organization name Cornell University
Department Population Medicine and Diagnostic Sciences
Lab Wagner
Street address 240 Farrier Drive
City Ithaca
State/province NY
ZIP/Postal code 14815
Country USA
Platforms (1)
GPL21401 Illumina NextSeq 500 (Equus caballus)
Samples (48)
GSM7395722 Horse 5, non-immune, d-2
GSM7395723 Horse 6, immune, d-2
GSM7395724 Horse 11, immune, d-2
BioProject PRJNA974455

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE232941_EHV-1_rawCounts.txt.gz 1.3 Kb (ftp)(http) TXT
GSE232941_equine_rawCounts.txt.gz 1.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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