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| Status |
Public on Jul 22, 2024 |
| Title |
Identifications of vernalization regulatory elements by epigenomic approaches in winter wheat (ATAC-Seq) |
| Organism |
Triticum aestivum |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Epigenetic modification plays a key role in the vernalization process and maintains gene expression states after low temperature. In this study, the Chinese main cultivar Aikang58 was used to construct the chromatin accessibility maps, expression profile and histone modification (including H3K27me3, H3K27ac, H3K36me3 and H3K4me3) maps of winter wheat before and after vernalization. We provided a crucial data resource for deep understanding of epigenome in vernalization. What’s more, important core regulatory elements and corresponding transcription factors were discovered, and the complex regulatory network of wheat vernalization was analyzed.
ATAC-seq of leaf, axillary bud and shoot apex before and after vernalization
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| |
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| Overall design |
ATAC-seq of leaf, axillary bud and shoot apex before and after vernalization
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| |
|
| Contributor(s) |
Lu Z |
| Citation(s) |
39080779 |
| |
| Submission date |
May 12, 2023 |
| Last update date |
Aug 26, 2024 |
| Contact name |
Zefu Lu |
| E-mail(s) |
luzefu@live.com
|
| Organization name |
Institute of Crop Sciences
|
| Street address |
No.12 Zhongguancun South St.,Haidian District, Beijing, P.R.China
|
| City |
Beijing |
| State/province |
Haidian |
| ZIP/Postal code |
100081 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL25409 |
Illumina NovaSeq 6000 (Triticum aestivum) |
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| Samples (14)
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| This SubSeries is part of SuperSeries: |
| GSE232430 |
Identifications of vernalization regulatory elements by epigenomic approaches in winter wheat |
|
| Relations |
| BioProject |
PRJNA971968 |
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