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| Status |
Public on May 08, 2023 |
| Title |
Effect of ATRX deficiency on gene expression of RCAS-nTva derived murine gliomas [RNA-seq: ATRX_Immuno_cell_line] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To investigate the impact of ATRX loss on tumor microenvironment we generated ATRX-intact and -deficient tumors in immune competent mice with the RCA-nTva system. Mice were injected with a tumorigenic RCAS construct (PDGFa and shTP53) and an RCAS bearing CRE recombinase. This was performed in mice that were ATRX wt and ATRX floxed. Tumors were then harvested, processed, and cell lines were generated and cultured for downstream analysis.
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| Overall design |
We performed expression profiling using bulk RNA-sequencing on cell lines derived from the above described tumor model. This was done on 3 technical replicates from the same 2 cell lines.
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| Contributor(s) |
Whtifield B, Malgulwar P, Irvin D, Huse J |
| Citation(s) |
38272925 |
| |
| Submission date |
May 06, 2023 |
| Last update date |
Feb 09, 2024 |
| Contact name |
Benjamin Whitfield |
| E-mail(s) |
BTWhitfield@mdanderson.org
|
| Phone |
9198023476
|
| Organization name |
MD Anderson/UT Health GSBS
|
| Street address |
5918 Belrose Dr
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77035 |
| Country |
USA |
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| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
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| Samples (6)
|
| GSM7304622 |
RCAS-nTva-derived Cell Line, ATRX Negative Line 1, sample 1 |
| GSM7304623 |
RCAS-nTva-derived Cell Line, ATRX Negative Line 1, sample 2 |
| GSM7304624 |
RCAS-nTva-derived Cell Line, ATRX Negative Line 1, sample 3 |
| GSM7304625 |
RCAS-nTva-derived Cell Line, ATRX Positive Line 1, sample 1 |
| GSM7304626 |
RCAS-nTva-derived Cell Line, ATRX Positive Line 1, sample 2 |
| GSM7304627 |
RCAS-nTva-derived Cell Line, ATRX Positive Line 1, sample 3 |
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| This SubSeries is part of SuperSeries: |
| GSE231832 |
Effect of ATRX deficiency on gene expression of RCAS-nTva derived murine gliomas |
|
| Relations |
| BioProject |
PRJNA967995 |
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