|
| Status |
Public on Jul 02, 2024 |
| Title |
ATAC-seq analysis for T-ALL cell lines |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ATAC-seq analysis was performed in multiple T-ALL cell lines to analyze chromatin accessibility.
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| |
|
| Overall design |
The cells are incubated with Tn5 transposase. Tagmented DNA fragments are purified with Zymo DNA purification kit. ATAC libraries are purified and sequenced on Illumina NovaSeq at GENEWIZ Azenta Life Sciences Co. Ltd.
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| |
|
| Contributor(s) |
Kim H, Tan TK, Tan SH, Sanda T |
| Citation(s) |
38969731 |
| |
| Submission date |
Apr 25, 2023 |
| Last update date |
Aug 11, 2024 |
| Contact name |
Tze King Tan |
| Organization name |
National University of Singapore
|
| Department |
Cancer Science Institute
|
| Lab |
Takaomi Sanda Lab
|
| Street address |
14 Medical Drive
|
| City |
Singapore |
| ZIP/Postal code |
117599 |
| Country |
Singapore |
| |
|
| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (6)
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| This SubSeries is part of SuperSeries: |
| GSE230594 |
Oncogenic roles of SWI/SNF chromatin remodeling factors: therapeutic targets in T-cell acute lymphoblastic leukemia |
|
| Relations |
| BioProject |
PRJNA961803 |
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