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| Status |
Public on Mar 01, 2024 |
| Title |
Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38514625 |
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| Submission date |
Apr 25, 2023 |
| Last update date |
Apr 02, 2024 |
| Contact name |
Yinghui Li |
| E-mail(s) |
liyh@ntu.edu.sg
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| Organization name |
Nanyang Technological University
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| Department |
School of Biological Sciences
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| Lab |
05n-21
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| Street address |
60 Nanyang Drive
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| City |
Singapore |
| State/province |
Singapore |
| ZIP/Postal code |
637551 |
| Country |
Singapore |
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| Platforms (4)
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| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
| GPL20795 |
HiSeq X Ten (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (90)
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| GSM7211190 |
KMS11, p52KD, ATAC-seq, biorep1 |
| GSM7211191 |
KMS11, p52KD, ATAC-seq, biorep2 |
| GSM7211192 |
KMS11, p52KD, ATAC-seq, biorep3 |
| GSM7211343 |
KMS11, control, H3K27ac HiChIP, biorep1 |
| GSM7211344 |
KMS11, p52KD, H3K27ac HiChIP, biorep1 |
| GSM7211345 |
KMS11, control, RNAseq, biorep1 |
| GSM7211346 |
KMS11, control, RNAseq, biorep2 |
| GSM7211347 |
KMS11, control, RNAseq, biorep3 |
| GSM7211348 |
KMS11, p52KD, RNAseq, biorep1 |
| GSM7211349 |
KMS11, p52KD, RNAseq, biorep2 |
| GSM7211350 |
KMS11, p52KD, RNAseq, biorep3 |
| GSM7211399 |
MM01, RNAseq, biorep1 |
| GSM7211400 |
MM03, RNAseq, biorep1 |
| GSM7211401 |
MM05, RNAseq, biorep1 |
| GSM7211402 |
MM06, RNAseq, biorep1 |
| GSM7211403 |
MM07, RNAseq, biorep1 |
| GSM7211404 |
MM09, RNAseq, biorep1 |
| GSM7211405 |
MM10, RNAseq, biorep1 |
| GSM7224167 |
JJN3, untreated, H3K27ac ChIP, biorep1 |
| GSM7224168 |
JJN3, untreated, H3K27ac ChIP, biorep2 |
| GSM7224169 |
JJN3, untreated, H3K27ac ChIP, biorep3 |
| GSM7224170 |
KMS11, untreated, H3K27ac ChIP, biorep1 |
| GSM7224171 |
KMS11, untreated, H3K27ac ChIP, biorep2 |
| GSM7224172 |
KMS11, untreated, H3K27ac ChIP, biorep3 |
| GSM7224173 |
LP1, untreated, H3K27ac ChIP, biorep1 |
| GSM7224174 |
LP1, untreated, H3K27ac ChIP, biorep2 |
| GSM7224175 |
LP1, untreated, H3K27ac ChIP, biorep3 |
| GSM7224176 |
MM1S, untreated, H3K27ac ChIP, biorep1 |
| GSM7224177 |
MM1S, untreated, H3K27ac ChIP, biorep2 |
| GSM7224178 |
MM1S, untreated, H3K27ac ChIP, biorep3 |
| GSM7224179 |
U266, untreated, H3K27ac ChIP, biorep1 |
| GSM7224180 |
U266, untreated, H3K27ac ChIP, biorep2 |
| GSM7224181 |
U266, untreated, H3K27ac ChIP, biorep3 |
| GSM7224182 |
JJN3, untreated, input ChIP, biorep1 |
| GSM7224183 |
KMS11, untreated, input ChIP, biorep1 |
| GSM7224184 |
LP1, untreated, input ChIP, biorep1 |
| GSM7224185 |
MM1S, untreated, input ChIP, biorep1 |
| GSM7224186 |
U266, untreated, input ChIP, biorep1 |
| GSM7224187 |
JJN3, untreated, p52 ChIP, biorep1 |
| GSM7224188 |
JJN3, untreated, p52 ChIP, biorep2 |
| GSM7224189 |
JJN3, untreated, p52 ChIP, biorep3 |
| GSM7224190 |
KMS11, untreated, p52 ChIP, biorep1 |
| GSM7224191 |
KMS11, untreated, p52 ChIP, biorep2 |
| GSM7224192 |
KMS11, untreated, p52 ChIP, biorep3 |
| GSM7224193 |
KMS11, untreated, p52 ChIP, biorep4 |
| GSM7224194 |
LP1, untreated, p52 ChIP, biorep1 |
| GSM7224195 |
LP1, untreated, p52 ChIP, biorep2 |
| GSM7224196 |
LP1, untreated, p52 ChIP, biorep3 |
| GSM7224197 |
MM1S, untreated, p52 ChIP, biorep1 |
| GSM7224198 |
MM1S, untreated, p52 ChIP, biorep2 |
| GSM7224199 |
MM1S, untreated, p52 ChIP, biorep3 |
| GSM7224200 |
U266, untreated, p52 ChIP, biorep1 |
| GSM7224201 |
U266, untreated, p52 ChIP, biorep2 |
| GSM7224202 |
U266, untreated, p52 ChIP, biorep3 |
| GSM7224203 |
KMS11, control, H3K27ac ChIP, biorep1 |
| GSM7224204 |
KMS11, control, H3K27ac ChIP, biorep2 |
| GSM7224205 |
KMS11, control, H3K27ac ChIP, biorep3 |
| GSM7224206 |
KMS11, p52KD, H3K27ac ChIP, biorep1 |
| GSM7224207 |
KMS11, p52KD, H3K27ac ChIP, biorep2 |
| GSM7224208 |
KMS11, p52KD, H3K27ac ChIP, biorep3 |
| GSM7224209 |
KMS11, control, input ChIP, biorep1 |
| GSM7224210 |
LP1, control, H3K27ac ChIP, biorep1 |
| GSM7224211 |
LP1, control, H3K27ac ChIP, biorep2 |
| GSM7224212 |
LP1, control, H3K27ac ChIP, biorep3 |
| GSM7224213 |
LP1, p52KD, H3K27ac ChIP, biorep1 |
| GSM7224214 |
LP1, p52KD, H3K27ac ChIP, biorep2 |
| GSM7224215 |
LP1, p52KD, H3K27ac ChIP, biorep3 |
| GSM7927099 |
MM1144, control, ATAC-seq, biorep1 |
| GSM7927100 |
MM1144, control, ATAC-seq, biorep2 |
| GSM7927101 |
MM1144, p52KD, ATAC-seq, biorep1 |
| GSM7927102 |
MM1144, p52KD, ATAC-seq, biorep2 |
| GSM7927103 |
MM1144, untreated, H3K27ac ChIP, biorep1 |
| GSM7927104 |
MM1144, untreated, H3K27ac ChIP, biorep2 |
| GSM7927105 |
KMS11, untreated, H3K27me3 ChIP, biorep1 |
| GSM7927106 |
KMS11, untreated, H3K27me3 ChIP, biorep2 |
| GSM7927107 |
KMS11, untreated, H3K4me1 ChIP, biorep1 |
| GSM7927108 |
KMS11, untreated, H3K4me1 ChIP, biorep2 |
| GSM7927109 |
MM1144, untreated, p52 ChIP, biorep1 |
| GSM7927110 |
MM1144, untreated, p52 ChIP, biorep2 |
| GSM7927111 |
MM1144, control, H3K27ac ChIP, biorep1 |
| GSM7927112 |
MM1144, control, H3K27ac ChIP, biorep2 |
| GSM7927113 |
MM1144, p52KD, H3K27ac ChIP, biorep1 |
| GSM7927114 |
MM1144, p52KD, H3K27ac ChIP, biorep2 |
| GSM7927115 |
MM1144, control, RNAseq, biorep1 |
| GSM7927116 |
MM1144, control, RNAseq, biorep2 |
| GSM7927117 |
MM1144, p52KD, RNAseq, biorep1 |
| GSM7927118 |
MM1144, p52KD, RNAseq, biorep2 |
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| This SuperSeries is composed of the following SubSeries:
|
| GSE230277 |
Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma [ATAC-seq] |
| GSE230292 |
Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma [HICHIP] |
| GSE230293 |
Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma [RNA1] |
| GSE230296 |
Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma [RNA2] |
| GSE230466 |
Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma [ChIP-seq] |
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| Relations |
| BioProject |
PRJNA961705 |
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