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Series GSE230332 Query DataSets for GSE230332
Status Public on Sep 28, 2023
Title Chromatin Conformation Capture in gg8tTAtetOP2 Olfactory Sensory Neurons
Organism Mus musculus
Experiment type Other
Summary We performed HiC, Liquid HiC, and H3K27ac HiChIP in gg8tTA; tetOP2 OSNs sorted from the mouse main olfactory epithelium (MOE).
 
Overall design All samples are GFP+ cells from gg8tTA>tetOP2iGFP mouse MOE and were processed for HiC, Liquid Hi-C, or H3K27ac HiChIP.
Web link https://pubmed.ncbi.nlm.nih.gov/38123679/
 
Contributor(s) Pourmorady A, Lomvardas S
Citation(s) 38123679
Submission date Apr 21, 2023
Last update date Dec 28, 2023
Contact name Ariel Pourmorady
E-mail(s) adp2164@columbia.edu, arielpourmorady@gmail.com
Organization name Columbia University
Department Neurobiology and Behavior
Lab Lomvardas Lab
Street address 3227 Broadway
City New York
State/province NY
ZIP/Postal code 10027
Country USA
 
Platforms (2)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
GPL30172 NextSeq 2000 (Mus musculus)
Samples (14)
GSM7213969 gg8tTAtetOP2, control HiC, r1
GSM7213970 gg8tTAtetOP2, control HiC, r2
GSM7213971 gg8tTAtetOP2, control HiC, r3
This SubSeries is part of SuperSeries:
GSE230380 Olfactory receptor mRNAs act as selfish non-coding RNAs that enforce transcriptional singularity
Relations
BioProject PRJNA960627

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE230332_RAW.tar 3.3 Gb (http)(custom) TAR (of TXT)
GSE230332_cis.gg8tTA.tetOP2.het.control.30minPreDig.Liquid.HiC.210807.merge.50000.txt.gz 106.2 Mb (ftp)(http) TXT
GSE230332_cis.gg8tTA.tetOP2.het.control.5minPreDig.LiquidHiC.merge.50000.txt.gz 129.6 Mb (ftp)(http) TXT
GSE230332_cis.gg8tTA.tetOP2.het.control.60minPreDig.Liquid.HiC.210807.merge.50000.txt.gz 121.1 Mb (ftp)(http) TXT
GSE230332_cis.gg8tTA.tetOP2.het.control.ImmediateFix.LiquidHiC.merge.50000.txt.gz 134.1 Mb (ftp)(http) TXT
GSE230332_cis.gg8tTAtetOP2.H3K27ac.HiChIP.AP151.AP152_230921.50000.txt.gz 60.3 Mb (ftp)(http) TXT
GSE230332_trans.gg8tTA.tetOP2.het.control.30minPreDig.Liquid.HiC.210807.merge.50000.txt.gz 494.1 Mb (ftp)(http) TXT
GSE230332_trans.gg8tTA.tetOP2.het.control.5minPreDig.LiquidHiC.merge.50000.txt.gz 612.3 Mb (ftp)(http) TXT
GSE230332_trans.gg8tTA.tetOP2.het.control.60minPreDig.Liquid.HiC.210807.merge.50000.txt.gz 607.3 Mb (ftp)(http) TXT
GSE230332_trans.gg8tTA.tetOP2.het.control.ImmediateFix.LiquidHiC.merge.50000.txt.gz 684.2 Mb (ftp)(http) TXT
GSE230332_trans.gg8tTAtetOP2.H3K27ac.HiChIP.AP151.AP152_230921.50000.txt.gz 214.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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