|
| Status |
Public on Feb 19, 2024 |
| Title |
Single cell RNA-seq analysis for spleen tissue under steady state, phenohydrazine (PHZ) and bleeding treatment. |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Single cell RNA-seq analysis for spleen tissue isolated from mice under steady state, and subjected to phenohydrazine (PHZ) and bleeding treatment respectively.
Single cell RNA-seq analysis for bone marrow cells isolated from mice under steady state.
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| |
|
| Overall design |
Mice were subjected to PHZ and bleeding induced acute anemic stresses, live cells from spleen under each condition were isolated for scRNA-seq.
Live cells isolated from fresh murine bone marrow were isolated for scRNA-seq.
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| |
|
| Contributor(s) |
Chong Y, Yokomori R, Sanda T, Suda T |
| Citation(s) |
38315834 |
| |
| Submission date |
Apr 21, 2023 |
| Last update date |
Apr 24, 2024 |
| Contact name |
Rui Yokomori |
| Organization name |
Cancer Science Institute of Singapore, National University of Singapore
|
| Lab |
Takaomi Sanda Lab
|
| Street address |
14 Medical Drive
|
| City |
Singapore |
| ZIP/Postal code |
117599 |
| Country |
Singapore |
| |
|
| Platforms (1) |
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| Samples (4)
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|
| Relations |
| BioProject |
PRJNA958251 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE230331_DGE_analysis.ery_prog.Clusters.tsv.gz |
35.2 Kb |
(ftp)(http) |
TSV |
| GSE230331_DGE_analysis.ery_prog.Groups1-5.tsv.gz |
18.2 Kb |
(ftp)(http) |
TSV |
| GSE230331_DGE_analysis.ery_prog.Stages1-3.tsv.gz |
11.9 Kb |
(ftp)(http) |
TSV |
| GSE230331_DGE_analysis.macrophage.Sample_Vcam1.tsv.gz |
5.0 Kb |
(ftp)(http) |
TSV |
| GSE230331_DGE_analysis.macrophage.Vcam1.tsv.gz |
8.1 Kb |
(ftp)(http) |
TSV |
| GSE230331_RAW.tar |
20.0 Kb |
(http)(custom) |
TAR (of TSV) |
| GSE230331_Seurat_raw_count_WT_PHZ_BLD.rds |
108.7 Mb |
(ftp)(http) |
RDS |
| GSE230331_Seurat_raw_count_WT_PHZ_BLD_BMWT.rds.gz |
184.9 Mb |
(ftp)(http) |
RDS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
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